FC920307

Overview
NameFC920307
Unique NameFC920307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11134 contig Ccv1_Contig11134:67..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: PPGB_MOUSE (Lysosomal protective protein OS=Mus musculus GN=Ctsa PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.169e-23
Identity = 50/100 (50.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:  308 DRVGKLPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSP 607
            D +  LPG     +F  YSGY+  ++   +   YWFVE+  DP + P+VLWLNGGPGCSS+  G   E GPF I+PDG TL  NPY+WN +AN+L+++SP
Sbjct:   28 DEIDCLPGLAKQPSFRQYSGYLRASDS--KHFHYWFVESQNDPKNSPVVLWLNGGPGCSSLD-GLLTEHGPFLIQPDGVTLEYNPYAWNLIANVLYIESP 124          

HSP 2 Score: 24.2534 bits (51), Expect = 1.169e-23
Identity = 12/27 (44.44%), Postives = 16/27 (59.26%), Query Frame = 1
Query:  604 PVGVGFSYSNTSSDITTNGDKRTAEDS 684
            P GVGFSYS+    +T   D   AE++
Sbjct:  124 PAGVGFSYSDDKMYVT--NDTEVAENN 148          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: YUW5_CAEEL (Uncharacterized serine carboxypeptidase F41C3.5 OS=Caenorhabditis elegans GN=F41C3.5 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.150e-22
Identity = 46/100 (46.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:  308 DRVGKLPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSP 607
            + +  LPG +F  NF HYSG+  V++     L YWFVE+  +P + PL+ W NGGPGCSS+  G   E+GP+    DGKTL  N YSWN++A++++++SP
Sbjct:   17 EEIKDLPGLDFEPNFKHYSGFFQVSDN--HVLHYWFVESQNEPSNDPLIFWFNGGPGCSSLD-GLLNEMGPYVANEDGKTLRENEYSWNKMASVVYIESP 113          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: YUA6_CAEEL (Uncharacterized serine carboxypeptidase F13S12.6 OS=Caenorhabditis elegans GN=F13D12.6 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.124e-19
Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 2
Query:  314 VGKLPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSP 607
            +  LPG   + NF  YSGY  V  +    L YWFVE+  +P + P++LWL GGPGCS ++     E GP+++  DG TL  NPYSWN+ A+IL L++P
Sbjct:   24 ITNLPGAPIS-NFKQYSGYYNVGTKKNHMLHYWFVESQSNPSTDPVLLWLTGGPGCSGLS-ALLTEWGPWNVNTDGATLRTNPYSWNKNASILTLEAP 119          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: YXD2_CAEEL (Uncharacterized serine carboxypeptidase C08H9.1 OS=Caenorhabditis elegans GN=C08H9.1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.710e-17
Identity = 42/101 (41.58%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  323 LPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKP-LVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPLVLVF 622
            LPG +   +    SGY+  NE   + +FY+ +EA + P  +  L++W NGGPGCSS++    EE GP ++   GK+L+ N +SW   ANILFL+SP+ + F
Sbjct:   26 LPGNSDIPDLKLQSGYLNANENGTQKMFYFLLEARDIPVGEASLIIWFNGGPGCSSLS-AFFEEFGPLYVNFGGKSLFENVHSWYHKANILFLESPIGVGF 125          

HSP 2 Score: 28.1054 bits (61), Expect = 1.710e-17
Identity = 12/27 (44.44%), Postives = 15/27 (55.56%), Query Frame = 1
Query:  604 PVGVGFSYSNTSSDITTNGDKRTAEDS 684
            P+GVGFSY    S+ T   D   AE +
Sbjct:  120 PIGVGFSYDTEQSNFTKVNDDSIAEQN 146          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: CBPY_YEAST (Carboxypeptidase Y OS=Saccharomyces cerevisiae GN=PRC1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.752e-17
Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = 2
Query:  347 NFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPLVLVF 622
            N   Y+GY+ V +E  +  F+W  E+  DP   P++LWLNGGPGCSS+  G   E+GP  I PD K +  NPYSWN  A ++FLD P+ + F
Sbjct:  124 NVTQYTGYLDVEDED-KHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFELGPSSIGPDLKPIG-NPYSWNSNATVIFLDQPVNVGF 212          

HSP 2 Score: 22.7126 bits (47), Expect = 3.752e-17
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  604 PVGVGFSYSNTS 639
            PV VGFSYS +S
Sbjct:  207 PVNVGFSYSGSS 218          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: CBPY_PICPG (Carboxypeptidase Y OS=Pichia pastoris (strain GS115) GN=PRC1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.072e-16
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 2
Query:  359 YSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPLVLVF 622
            YSGY+ V E   +  FYWF E+  DP + P++LWLNGGPGCSS+  G   E+G   I  + K ++ NPYSWN  A+I++LD P+ + F
Sbjct:  123 YSGYLDV-EADDKHFFYWFFESRNDPQNDPIILWLNGGPGCSSLT-GLFFELGSSRINENLKPIF-NPYSWNGNASIIYLDQPVNVGF 207          

HSP 2 Score: 23.0978 bits (48), Expect = 1.072e-16
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  604 PVGVGFSYSNTS 639
            PV VGFSYS++S
Sbjct:  202 PVNVGFSYSSSS 213          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: SCPL1_DICDI (Serine carboxypeptidase S10 family member 1 OS=Dictyostelium discoideum GN=DDB_G0291912 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.451e-16
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 2
Query:  362 SGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPL 610
            SGY  VNE +   LFY F E+   P + PL+LWL GGPGCSS+     E  GP+ +  D  TL  NP SWN VAN+L++DSPL
Sbjct:   27 SGYFNVNETTNANLFYLFYESQNSPSTDPLILWLTGGPGCSSLMAAFYEN-GPYFVN-DNLTLSENPNSWNMVANVLYVDSPL 107          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: CBPY_SCHPO (Carboxypeptidase Y OS=Schizosaccharomyces pombe GN=cpy1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.476e-16
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  359 YSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPL 610
            Y+GY+ V ++  R LF+WF E+  DP++ P+VLWLNGGPGCSS+  G   E+GP  I  +      NP+SWN  A+++FLD P+
Sbjct:  589 YTGYLDVEDD--RHLFFWFFESRNDPENDPVVLWLNGGPGCSSLT-GLFMELGPSSINIETLKPEYNPHSWNSNASVIFLDQPI 669          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: CBPY_CANAL (Carboxypeptidase Y OS=Candida albicans GN=CPY1 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 8.720e-16
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 2
Query:  359 YSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFLDSPL 610
            YSGY+ V +E  +  FY+F E+  DP + P++LWLNGGPGCSS+  G   E+GP  I  + K +Y NP+SWN  A+++FLD P+
Sbjct:  143 YSGYLDVVDED-KHFFYYFFESRNDPKNDPVILWLNGGPGCSSLT-GLFFELGPSSIDKNLKPVY-NPHSWNANASVIFLDQPI 223          

HSP 2 Score: 21.1718 bits (43), Expect = 8.720e-16
Identity = 9/21 (42.86%), Postives = 12/21 (57.14%), Query Frame = 1
Query:  604 PVGVGFSYSNTSSDITTNGDK 666
            P+ VG+SYS+ S   T    K
Sbjct:  222 PINVGYSYSSQSVSNTIAAGK 242          
BLAST of FC920307 vs. ExPASy Swiss-Prot
Match: SCP10_ARATH (Serine carboxypeptidase-like 10 OS=Arabidopsis thaliana GN=SCPL10 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.765e-16
Identity = 41/104 (39.42%), Postives = 61/104 (58.65%), Query Frame = 2
Query:  314 VGKLPGQNFNVNFAHYSGYVTVNEESGRALFYWFVEAVEDPDSKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKP-----DGKTLYLNPYSWNQVANILFLDSPL 610
            V  LPG    + F   +GY+ + EE    LFY+F+++  +P   PL+LWL+GGPGCSS+  G   E GP  +K         +L+   YSW ++ANI++LD P+
Sbjct:   25 VKSLPGLEGRLPFELETGYIGIGEEEDIQLFYYFIKSENNPKEDPLLLWLDGGPGCSSLG-GLLFENGPVALKSAVYNGSNPSLFSTTYSWTKMANIIYLDQPV 127          

HSP 2 Score: 22.7126 bits (47), Expect = 8.765e-16
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 1
Query:  604 PVGVGFSYSNT 636
            PVG GFSYS T
Sbjct:  126 PVGSGFSYSRT 136          
The following BLAST results are available for this feature:
BLAST of FC920307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
PPGB_MOUSE1.169e-2350.00Lysosomal protective protein OS=Mus musculus GN=Ct... [more]
YUW5_CAEEL5.150e-2246.00Uncharacterized serine carboxypeptidase F41C3.5 OS... [more]
YUA6_CAEEL3.124e-1945.92Uncharacterized serine carboxypeptidase F13S12.6 O... [more]
YXD2_CAEEL1.710e-1741.58Uncharacterized serine carboxypeptidase C08H9.1 OS... [more]
CBPY_YEAST3.752e-1746.74Carboxypeptidase Y OS=Saccharomyces cerevisiae GN=... [more]
CBPY_PICPG1.072e-1647.73Carboxypeptidase Y OS=Pichia pastoris (strain GS11... [more]
SCPL1_DICDI1.451e-1651.81Serine carboxypeptidase S10 family member 1 OS=Dic... [more]
CBPY_SCHPO2.476e-1647.62Carboxypeptidase Y OS=Schizosaccharomyces pombe GN... [more]
CBPY_CANAL8.720e-1648.81Carboxypeptidase Y OS=Candida albicans GN=CPY1 PE=... [more]
SCP10_ARATH8.765e-1639.42Serine carboxypeptidase-like 10 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionC32006F07EF RVDevelop1 Citrus clementina cDNA clone C32006F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920307 ID=FC920307; Name=FC920307; organism=Citrus clementina; type=EST; length=734bp
GGACATCATTCAAATCATTCATCGAACCCACTATTCTGGACAGAGAAATC
AAAAGGGCTTAAGTTCTGTTCAGCAGATAAACTGAACAAAGAAAAAAAAA
AAATTCCTCAGAACACTATCATTGGCTCCAACGTTTTTGCTTGATTATGT
CTTCTTTATAAGTCGCAGTACCCCAGTACACTAAACCATATAAAAAATGG
CTTATAATCCAAAAGGGGCTTCCTTTCTTGTTCAAATCTTGTTCATTTGC
ATAATTTTTTATCTGGGCAGTGCCTTTTCAACAGACCCAGTTGCCCAGCA
AAAACTTGACAGAGTTGGGAAGCTACCTGGGCAAAATTTCAATGTCAACT
TTGCCCATTACTCTGGTTATGTCACAGTCAACGAAGAATCCGGGAGGGCT
CTCTTTTATTGGTTCGTTGAAGCTGTTGAAGATCCTGATTCCAAGCCTCT
TGTGCTTTGGCTCAATGGAGGGCCTGGGTGTTCATCCATTGCTTATGGAG
AGGCAGAGGAAATAGGTCCTTTTCACATCAAGCCAGATGGGAAGACCTTA
TACTTGAATCCTTACTCTTGGAATCAAGTTGCCAACATTCTGTTTCTTGA
TTCCCCGTTGGTGTTGGTTTTTCATATTCAAATACATCCTCTGATATTAC
GACCAATGGCGATAAAAGGACTGCGGAGGATTCCCTAAAATTTTACTAAA
GTGTTAGAACGGTTTCACATTTTAAGGAGGGATT
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