FC920318

Overview
NameFC920318
Unique NameFC920318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: EFTU_RICCN (Elongation factor Tu OS=Rickettsia conorii GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 63/192 (32.81%), Postives = 92/192 (47.92%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPREVPFV 669
            + K H+NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+   E+P +
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETQNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKIDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPII 171          
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: EFTU_RICCK (Elongation factor Tu OS=Rickettsia canadensis (strain McKiel) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 63/192 (32.81%), Postives = 92/192 (47.92%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPREVPFV 669
            + K H+NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+   E+P +
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKVDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPII 171          
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: EFTU_RICAE (Elongation factor Tu OS=Rickettsia africae (strain ESF-5) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 63/192 (32.81%), Postives = 92/192 (47.92%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPREVPFV 669
            + K H+NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+   E+P +
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKIDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPII 171          
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: EFTU_RAT (Elongation factor Tu, mitochondrial OS=Rattus norvegicus GN=Tufm PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 64/190 (33.68%), Postives = 92/190 (48.42%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPREVPFV 669
            ++K H+N+  IGHVD GK+T T  +                K  AE     FK    +D    ER RGITI+ A  ++ T   +    D PGH D++KNMITGT+  D  +L++ +  G          QTREH LLA  +GV+ ++   NK DA       +   E+V+ E+   L + GY   E P +
Sbjct:   53 RDKPHVNVGTIGHVDHGKTTLTAAIT---------------KILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP-------QTREHLLLAKQIGVEHVVVYVNKADAV----QDSEMVELVELEIRELLTEFGYKGEETPVI 216          
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: EFTU_PROWI (Elongation factor Tu, plastid OS=Prototheca wickerhamii GN=tufA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 66/191 (34.55%), Postives = 96/191 (50.26%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPREVPFVP 672
            ++K H+NI  IGHVD GK+T T  +   L              AA    +  KYA + D    E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++    G          QT+EH LLA  +GV  ++   NK D    +       E+V+ EV   L++  +   EVP +P
Sbjct:    8 RKKPHVNIGTIGHVDHGKTTLTAAITMAL--------------AARGGGKGKKYAEI-DSAPEEKARGITINTAHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHILLAKQVGVPNIVVFINKED----QVDDIELIELVELEVRETLQRYDFPGDEVPMIP 172          
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: EFTU_MYCVP (Elongation factor Tu OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 61/155 (39.35%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 564
            + K H+NI  IGHVD GK+T T         I K + +++     ++N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----DLNESRAFDQ---IDNAPEERQRGITINISHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKAD 141          
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: EFTU_MYCPA (Elongation factor Tu OS=Mycobacterium paratuberculosis GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 61/155 (39.35%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 564
            + K H+NI  IGHVD GK+T T         I K + +++     ++N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----DLNESRAFDQ---IDNAPEERQRGITINISHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKAD 141          
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: EFTU_MYCA1 (Elongation factor Tu OS=Mycobacterium avium (strain 104) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 61/155 (39.35%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 564
            + K H+NI  IGHVD GK+T T         I K + +++     ++N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----DLNESRAFDQ---IDNAPEERQRGITINISHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKAD 141          
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: EFTU_MOUSE (Elongation factor Tu, mitochondrial OS=Mus musculus GN=Tufm PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 64/190 (33.68%), Postives = 92/190 (48.42%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPREVPFV 669
            ++K H+N+  IGHVD GK+T T  +                K  AE     FK    +D    ER RGITI+ A  ++ T   +    D PGH D++KNMITGT+  D  +L++ +  G          QTREH LLA  +GV+ ++   NK DA       +   E+V+ E+   L + GY   E P +
Sbjct:   53 RDKPHVNVGTIGHVDHGKTTLTAAIT---------------KILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP-------QTREHLLLAKQIGVEHVVVYVNKADAV----QDSEMVELVELEIRELLTEFGYKGEETPVI 216          
BLAST of FC920318 vs. ExPASy Swiss-Prot
Match: EFTU_LACJO (Elongation factor Tu OS=Lactobacillus johnsonii GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 65/189 (34.39%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  103 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPREVPFV 669
            + K H+NI  IGHVD GK+T T  +   L        E + +               +D    E+ERGITI+ A  ++ET   +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV+ ++   NK+D           D +  EV   L +  Y   +VP +
Sbjct:    9 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAEDGLAQAEDYSQ---------------IDAAPEEKERGITINTAHVEYETKNRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVQYIVVFLNKVDLVD---DPELIDLVEMEVRDLLSEYDYPGDDVPVI 172          
The following BLAST results are available for this feature:
BLAST of FC920318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_RICCN2.510e-2032.81Elongation factor Tu OS=Rickettsia conorii GN=tuf ... [more]
EFTU_RICCK2.510e-2032.81Elongation factor Tu OS=Rickettsia canadensis (str... [more]
EFTU_RICAE2.510e-2032.81Elongation factor Tu OS=Rickettsia africae (strain... [more]
EFTU_RAT2.510e-2033.68Elongation factor Tu, mitochondrial OS=Rattus norv... [more]
EFTU_PROWI2.510e-2034.55Elongation factor Tu, plastid OS=Prototheca wicker... [more]
EFTU_MYCVP2.510e-2039.35Elongation factor Tu OS=Mycobacterium vanbaalenii ... [more]
EFTU_MYCPA2.510e-2039.35Elongation factor Tu OS=Mycobacterium paratubercul... [more]
EFTU_MYCA12.510e-2039.35Elongation factor Tu OS=Mycobacterium avium (strai... [more]
EFTU_MOUSE2.510e-2033.68Elongation factor Tu, mitochondrial OS=Mus musculu... [more]
EFTU_LACJO2.510e-2034.39Elongation factor Tu OS=Lactobacillus johnsonii GN... [more]

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Properties
Property NameValue
Genbank descriptionC32006G08EF RVDevelop1 Citrus clementina cDNA clone C32006G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920318 ID=FC920318; Name=FC920318; organism=Citrus clementina; type=EST; length=686bp
GCTCTTTTCAATACACTCTCTCAATTTCCGAAGGGCGGCGAGAGAGAACC
ATTTTCGCGAATATCATTTTAATAAGGTTTTTTCTAGATTTGCCTAATGG
GTAAGGAGAAGACTCACATCAACATTGTGGTCATCGGCCATGTCGACTCT
GGAAAGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGA
CAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGA
GGTCATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAA
CGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTA
CTACTGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACA
TGATTACCGGTACCTCACAGGCTGACTGTGCTGTCCTCATCATTGACTCT
ACCACTGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGA
GCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCT
GTAACAAGATGGACGCCACCACCCCCAAGTATTCAAAGGCTAGGTACGAT
GAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCC
CCGAGAAGTCCCATTCGTGCCCATCTCTGGTTTCGA
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