FC920336

Overview
NameFC920336
Unique NameFC920336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15544 contig Ccv1_Contig15544:86..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATM_CHICK (Aspartate aminotransferase, mitochondrial OS=Gallus gallus GN=GOT2 PE=1 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 3.775e-57
Identity = 108/210 (51.43%), Postives = 144/210 (68.57%), Query Frame = 3
Query:   63 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKD 689
            + S +  +   P DPILGVT A+ +DT+  K+NLGVGAYR + GK  VLN VRKAE ++   +   KEYLPI GL DF + SA+L LG +S A K  R  TVQ +SGTGSLRVGA FL R +     +Y+P+P+WGNH  +F  AGL ++ YRYYDP T  L+F G +ED+   P  +I+LLHACAHNPTGVDP  EQW+++  +++ ++
Sbjct:   22 ASSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKSYVLNCVRKAEAMIAAKKMD-KEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRN 230          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATM_SCHPO (Aspartate aminotransferase, mitochondrial OS=Schizosaccharomyces pombe GN=aat1 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.072e-55
Identity = 108/206 (52.43%), Postives = 139/206 (67.48%), Query Frame = 3
Query:   72 VFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKD 689
            V+  +   P DPI G+T AY KD    K+NLG G YR + GKP VL  VR+AE  L++ Q   KEY PI G+  F   + KL  G    +IKD R+ + Q +SGTG+L + A FLA  Y   TIY+  PTWGNH  VF+ AGL+VK+Y+YYDPATRGL+ +G+L DL +AP G+I+LLHACAHNPTGVDPT  QW+ I + M+ K+
Sbjct:   39 VWADVPMGPPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLS-QKLDKEYAPITGIPSFRVQATKLAYGDVYESIKD-RLVSAQSISGTGALCIAANFLASFYPSKTIYVSDPTWGNHKNVFSRAGLTVKSYKYYDPATRGLDIKGMLSDLTSAPDGSIILLHACAHNPTGVDPTKAQWDDILKTMQKKN 242          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATM_RAT (Aspartate aminotransferase, mitochondrial OS=Rattus norvegicus GN=Got2 PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 2.072e-55
Identity = 105/201 (52.24%), Postives = 141/201 (70.15%), Query Frame = 3
Query:   96 PEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKDCY 695
            P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL DF K SA+L LG +S  +K  R  TVQ +SGTG+LRVGA FL R +     +++P+P+WGNH  +F  AG+ ++ YRYYDP T G +F G LED+   P  +++LLHACAHNPTGVDP  EQW+++  +++ K+ +
Sbjct:   40 PPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAG-KNLDKEYLPIGGLADFCKASAELALGENSEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEMAAVVKKKNLF 239          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATM_HORSE (Aspartate aminotransferase, mitochondrial OS=Equus caballus GN=GOT2 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.072e-55
Identity = 108/210 (51.43%), Postives = 142/210 (67.62%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKDCY 695
            S +  +   P DPILGVT AY +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG +S A+K  R  TVQ +SGTG+LR+GA FL R +     +++P+P+WGNH  +F  AGL +  YRYYDP T G +  G LED+   P  +I+LLHACAHNPTGVDP  EQW++I  L++  + +
Sbjct:    2 SWWAHVEMGPPDPILGVTEAYKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENSEALKSGRYVTVQSISGTGALRIGANFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGLQLHAYRYYDPKTCGFDVTGALEDISKIPQQSIILLHACAHNPTGVDPRPEQWKEIATLVKKNNLF 210          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC_BOVIN (Aspartate aminotransferase, cytoplasmic OS=Bos taurus GN=GOT1 PE=1 SV=3)

HSP 1 Score: 215.698 bits (548), Expect = 2.072e-55
Identity = 107/216 (49.54%), Postives = 144/216 (66.67%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            M   S+F ++ +A    +  +T  + +D  P K+NLGVGAYRT++ +P VL VVRK EQ + ND S   EYLPI+GL +F   +++L LG DSPA+++ RV  VQCL GTG+LR+GAEFLAR Y+        +Y+  PTW NH  VF  AG   +++Y Y+D A RGL+ QG L DL  AP  +I +LHACAHNPTG DPT EQW+QI  +M+ +
Sbjct:    1 MAPPSIFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDSQPWVLPVVRKVEQRIANDSSINHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQCLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFIAAGFKDIRSYHYWDAAKRGLDLQGFLNDLEKAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR 216          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATM_BOVIN (Aspartate aminotransferase, mitochondrial OS=Bos taurus GN=GOT2 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 4.615e-55
Identity = 102/212 (48.11%), Postives = 146/212 (68.87%), Query Frame = 3
Query:   63 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKDCY 695
            + S +  +   P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG ++  +K  R  TVQ +SGTG+LR+GA FL R +     +++P+PTWGNH  +F  AG+ +++YRYYDP T G +F G +ED+   P+ +++LLHACAHNPTGVDP  EQW+++  +++  + +
Sbjct:   29 ASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIAGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPTWGNHTPIFRDAGMQLQSYRYYDPKTCGFDFTGAIEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATVVKKNNLF 239          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC_PONAB (Aspartate aminotransferase, cytoplasmic OS=Pongo abelii GN=GOT1 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.615e-55
Identity = 108/216 (50.00%), Postives = 145/216 (67.13%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            M   SVF ++ +A    +  +T  + +D  P K+NLGVGAYRT++  P VL VV+K EQ + ND S   EYLPI+GL +F   +++L LG DSPA+K+ RV  VQ L GTG+LR+GA+FLAR Y+        +Y+  PTW NH  VF+ AG   +++YRY+D   RGL+ QGLL DL  AP  +IV+LHACAHNPTG DPT EQW+QI  +M+ +
Sbjct:    1 MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGLLNDLENAPEFSIVVLHACAHNPTGTDPTPEQWKQIASVMKHR 216          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC_PANTR (Aspartate aminotransferase, cytoplasmic OS=Pan troglodytes GN=GOT1 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.028e-55
Identity = 107/216 (49.54%), Postives = 145/216 (67.13%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            M   SVF ++ +A    +  +T  + +D  P K+NLGVGAYRT++  P VL VV+K EQ + ND S   EYLPI+GL +F   +++L LG DSPA+K+ RV  VQ L GTG+LR+GA+FLAR Y+        +Y+  PTW NH  VF+ AG   +++YRY+D   RGL+ QG L DL  AP  +IV+LHACAHNPTG+DPT EQW+QI  +M+ +
Sbjct:    1 MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIASVMKHR 216          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC_HUMAN (Aspartate aminotransferase, cytoplasmic OS=Homo sapiens GN=GOT1 PE=1 SV=3)

HSP 1 Score: 214.157 bits (544), Expect = 6.028e-55
Identity = 107/216 (49.54%), Postives = 145/216 (67.13%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLAGL-SVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            M   SVF ++ +A    +  +T  + +D  P K+NLGVGAYRT++  P VL VV+K EQ + ND S   EYLPI+GL +F   +++L LG DSPA+K+ RV  VQ L GTG+LR+GA+FLAR Y+        +Y+  PTW NH  VF+ AG   +++YRY+D   RGL+ QG L DL  AP  +IV+LHACAHNPTG+DPT EQW+QI  +M+ +
Sbjct:    1 MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIASVMKHR 216          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATM_MOUSE (Aspartate aminotransferase, mitochondrial OS=Mus musculus GN=Got2 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.872e-55
Identity = 104/201 (51.74%), Postives = 141/201 (70.15%), Query Frame = 3
Query:   96 PEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKDCY 695
            P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL  VRKAE  +   ++  KEYLPI GL +F K SA+L LG ++  +K  R  TVQ +SGTG+LRVGA FL R +     +++P+P+WGNH  +F  AG+ ++ YRYYDP T G +F G LED+   P  +++LLHACAHNPTGVDP  EQW++I  +++ K+ +
Sbjct:   40 PPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIASVVKKKNLF 239          
The following BLAST results are available for this feature:
BLAST of FC920336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
AATM_CHICK3.775e-5751.43Aspartate aminotransferase, mitochondrial OS=Gallu... [more]
AATM_SCHPO2.072e-5552.43Aspartate aminotransferase, mitochondrial OS=Schiz... [more]
AATM_RAT2.072e-5552.24Aspartate aminotransferase, mitochondrial OS=Rattu... [more]
AATM_HORSE2.072e-5551.43Aspartate aminotransferase, mitochondrial OS=Equus... [more]
AATC_BOVIN2.072e-5549.54Aspartate aminotransferase, cytoplasmic OS=Bos tau... [more]
AATM_BOVIN4.615e-5548.11Aspartate aminotransferase, mitochondrial OS=Bos t... [more]
AATC_PONAB4.615e-5550.00Aspartate aminotransferase, cytoplasmic OS=Pongo a... [more]
AATC_PANTR6.028e-5549.54Aspartate aminotransferase, cytoplasmic OS=Pan tro... [more]
AATC_HUMAN6.028e-5549.54Aspartate aminotransferase, cytoplasmic OS=Homo sa... [more]
AATM_MOUSE7.872e-5551.74Aspartate aminotransferase, mitochondrial OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionC32007A06EF RVDevelop1 Citrus clementina cDNA clone C32007A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920336 ID=FC920336; Name=FC920336; organism=Citrus clementina; type=EST; length=734bp
GATTTTTTTTTCCCCCACAAACTCTCTCTTTTCATTGATTTCTTGAAAGA
AATTTAATGGATTCTGAATCAGTGTTTGGAAAGATTGTTCGTGCTCCTGA
AGATCCCATTCTAGGGGTCACTGTTGCTTATAACAAGGATACAAGCCCAG
TCAAGTTGAACTTGGGTGTTGGTGCTTACCGAACTGAGGAAGGGAAACCT
CTGGTTCTGAATGTAGTGAGAAAGGCAGAGCAGCTCTTAGTGAATGACCA
GTCACGGGTCAAAGAGTATCTTCCCATTGTTGGACTTGTGGATTTTAATA
AATTGAGTGCAAAGCTCATCCTTGGTGCTGACAGCCCTGCGATTAAAGAC
AACAGAGTGACCACCGTTCAGTGCTTGTCTGGCACTGGTTCTTTGAGGGT
TGGAGCTGAGTTTCTGGCAAGGCATTATCACCAACTTACCATATATATTC
CACAGCCAACATGGGGAAACCATCCCAAAGTTTTCACTTTAGCAGGATTG
TCTGTGAAGACCTACCGCTATTATGATCCAGCAACACGTGGGCTAAACTT
CCAAGGCTTGCTGGAGGATCTTAGGGCTGCACCATCCGGAGCTATAGTTC
TTCTTCATGCATGTGCTCATAATCCAACTGGTGTTGACCCGACCCTTGAG
CAGTGGGAGCAGATCAGGCAGCTGATGAGGTCAAAGGATTGTTACCTTTC
TTGACAGTGCTATCAGGNTTTGCAGTGGTAGCTA
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