FC920358

Overview
NameFC920358
Unique NameFC920358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_METEP (Chaperone protein htpG OS=Methylobacterium extorquens (strain PA1) GN=htpG PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.496e-38
Identity = 91/190 (47.89%), Postives = 131/190 (68.95%), Query Frame = 1
Query:  115 MADT-ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL-----QAGAD--VSMIGQFGVGFYSAYLVAERVVVTTKH-NDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            M++T E   F AE+ +LL L+++  YS++EIFLREL++N++DA D+ RFE+LT+++ L    +  + I PDKA +TLTI D+GIGM+K DL  NLGTIARSGT+ F +AL     + G D   S+IGQFGVGFYSA++VA+RV VT++    +E + W S   GS+T+      +P   GT + L++KED
Sbjct:    1 MSETVERHEFGAEVGRLLDLVVHALYSDREIFLRELVANAADATDRRRFEALTNEA-LALPSDARVLIAPDKAARTLTISDAGIGMSKEDLAQNLGTIARSGTRAFSQALGERAAEGGEDQRPSLIGQFGVGFYSAFMVADRVTVTSRRAGSEEAWTWASDGKGSYTLEPASREQP---GTDIVLHMKED 186          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_METC4 (Chaperone protein htpG OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=htpG PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.496e-38
Identity = 91/190 (47.89%), Postives = 131/190 (68.95%), Query Frame = 1
Query:  115 MADT-ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL-----QAGAD--VSMIGQFGVGFYSAYLVAERVVVTTKH-NDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            M++T E   F AE+ +LL L+++  YS++EIFLREL++N++DA D+ RFE+LT+++ L    +  + I PDKA +TLTI D+GIGM+K DL  NLGTIARSGT+ F +AL     + G D   S+IGQFGVGFYSA++VA+RV VT++    +E + W S   GS+T+      +P   GT + L++KED
Sbjct:    1 MSETVERHEFGAEVGRLLDLVVHALYSDREIFLRELVANAADATDRRRFEALTNEA-LALPSDARVLIAPDKAARTLTISDAGIGMSKEDLAQNLGTIARSGTRAFSQALGERAAEGGEDQRPSLIGQFGVGFYSAFMVADRVTVTSRRAGSEEAWTWASDGKGSYTLEPASREQP---GTDIVLHMKED 186          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_VIBFI (Chaperone protein htpG (Fragment) OS=Vibrio fischeri GN=htpG PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.260e-38
Identity = 85/185 (45.95%), Postives = 128/185 (69.19%), Query Frame = 1
Query:  118 ADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            A+ ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF++L++    +G  +L +++  ++A  TLTI D+GIGM++ D++ +LGTIA+SGT +F   L      D  +IGQFGVGFYSA++VA+ V V T+      D+   W S+  G +T+  D++ E   RGT + L+++E+
Sbjct:    6 ANKETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDASDKLRFKALSNGDLYEGNADLGVKLSFNEAANTLTISDNGIGMSREDVIEHLGTIAKSGTADFFSKLSEDQSKDSQLIGQFGVGFYSAFIVADAVTVRTRAAGSEKDQGVQWHSEGEGDYTI-EDITKE--SRGTDIILHMREE 187          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_VIBF1 (Chaperone protein htpG OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=htpG PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.260e-38
Identity = 85/185 (45.95%), Postives = 128/185 (69.19%), Query Frame = 1
Query:  118 ADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTK---HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            A+ ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF++L++    +G  +L +++  ++A  TLTI D+GIGM++ D++ +LGTIA+SGT +F   L      D  +IGQFGVGFYSA++VA+ V V T+      D+   W S+  G +T+  D++ E   RGT + L+++E+
Sbjct:    6 ANKETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDASDKLRFKALSNGDLYEGNADLGVKLSFNEAANTLTISDNGIGMSREDVIEHLGTIAKSGTADFFSKLSEDQSKDSQLIGQFGVGFYSAFIVADAVTVRTRAAGSEKDQGVQWHSEGEGDYTI-EDITKE--SRGTDIILHMREE 187          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_RICB8 (Chaperone protein htpG OS=Rickettsia bellii (strain OSU 85-389) GN=htpG PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.260e-38
Identity = 82/177 (46.33%), Postives = 123/177 (69.49%), Query Frame = 1
Query:  139 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGA--DVSMIGQFGVGFYSAYLVAERVVVTT-KHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            F AE+ ++L+L+I++ YSNKEIF+RELISN+SDA DK+R+ S ++   + G     I +  DK N  + I D+GIGM K DL+ NLGTIARSGT  F++ L   +  D  +IGQFGVGFYS+++VA++V VT+ K  +D+ Y+WES+  G + V+   S     RGT++ L++K+++
Sbjct:    8 FDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSEAELVAGDSNFKITVKGDKNNGQVIIRDNGIGMNKEDLIENLGTIARSGTANFLKNLSGDSKKDNMLIGQFGVGFYSSFMVADKVTVTSRKAGEDKVYVWESEGEGEYIVSN--SDREFSRGTEIALHIKKEE 182          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_RHOPB (Chaperone protein htpG OS=Rhodopseudomonas palustris (strain BisB18) GN=htpG PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.260e-38
Identity = 81/177 (45.76%), Postives = 122/177 (68.93%), Query Frame = 1
Query:  139 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGAD-VSMIGQFGVGFYSAYLVAERVVVTTKH-NDDEQYIWESQAGGSFTV--TRDVSGEPLGRGTKMTLYLKED 657
            FQAE+ +LL+L++++ YS  +IFLRELISN+SDALDK+R+ES+     +    E  IRI+P K   TL+++D+G+GM + +L++NLGTIA+SGTK F+  L    D   +IGQFGVGFY+A++VA+R+VVT++     E + W S  G  F +    +     + RGT++ L+LK+D
Sbjct:   13 FQAEVAELLNLMVHSVYSETDIFLRELISNASDALDKLRYESIAKPELMADGGEPKIRILPKKEPDTLSVIDNGLGMDRQELIDNLGTIAKSGTKSFLTKLTEAKDGAGLIGQFGVGFYAAFMVADRIVVTSRRARSAEAWTWSSSGGAGFEIAPASEEDAARVTRGTEIVLHLKKD 189          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_PSEMY (Chaperone protein htpG OS=Pseudomonas mendocina (strain ymp) GN=htpG PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.260e-38
Identity = 89/183 (48.63%), Postives = 124/183 (67.76%), Query Frame = 1
Query:  127 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAERVVVTTKH---NDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            ET  FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RFE+L     L+G  EL IR+  DK  KT+T+ D+GIGM++ +++ +LGTIA+SGT +F++ L      D  +IGQFGVGFYSA++VA++V V T+    +  E   W S+  G F V    + E   RGT++ L+LK  +
Sbjct:    8 ETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFEALAKPELLEGGAELKIRLSFDKDAKTVTLEDNGIGMSRDEVIAHLGTIAKSGTADFLKNLSGDQKKDSHLIGQFGVGFYSAFIVADKVDVFTRRAGLSAAEGVHWSSKGEGEFEV---ATVEKAERGTRIVLHLKSGE 187          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_CHLCH (Chaperone protein htpG OS=Chlorobium chlorochromatii (strain CaD3) GN=htpG PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.260e-38
Identity = 85/182 (46.70%), Postives = 125/182 (68.68%), Query Frame = 1
Query:  127 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL---QAGADVSMIGQFGVGFYSAYLVAERVVVTTK--HNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            + F ++AE+ QLL LII++ Y++ EI+LRELISN+SDAL K RF +LTD+  LD   EL IR+  +   K++ I DSGIGMT+ +L+ NLGT+A+SGT  FM++L   Q   D ++IGQFGVGFYS ++V E V V T+  H++ + Y W S   G++T+ +    +   RGT+++  LKE+
Sbjct:   14 QEFEYKAEMKQLLDLIIHSLYTHPEIYLRELISNASDALSKARFNALTDQDMLDKDAELAIRLTLNAEEKSVVIEDSGIGMTEEELIANLGTVAKSGTLGFMQSLKEQQQQLDGNLIGQFGVGFYSVFMVTEEVTVETRSFHSNAQGYRWRSSGQGTYTIEQI---DKATRGTRISFKLKEE 192          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_VIBHB (Chaperone protein htpG OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=htpG PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.257e-38
Identity = 87/185 (47.03%), Postives = 125/185 (67.57%), Query Frame = 1
Query:  127 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERVVVTTKHND---DEQYIWESQAGGSFTV---TRDVSGEPLGRGTKMTLYLKED 657
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF++L++    +G  +L +++  D++  TLTI D+GIGM++ D++ +LGTIA+SGT EF   L      D  +IGQFGVGFYSA++VA+ V V T+      DE   W+S   G +TV   T+D       RGT + L+++E+
Sbjct:   10 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDASDKLRFQALSNPDLYEGNADLGVKLAFDESANTLTISDNGIGMSRDDVIEHLGTIAKSGTAEFFSKLSDDQSKDSQLIGQFGVGFYSAFIVADAVTVCTRAAGLAADEAVQWQSAGEGDYTVETITKD------SRGTDIVLHMREE 188          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_RICBR (Chaperone protein htpG OS=Rickettsia bellii (strain RML369-C) GN=htpG PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.257e-38
Identity = 82/177 (46.33%), Postives = 123/177 (69.49%), Query Frame = 1
Query:  139 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGA--DVSMIGQFGVGFYSAYLVAERVVVTT-KHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            F AE+ ++L+L+I++ YSNKEIF+RELISN+SDA DK+R+ S ++   + G     I +  DK N  + I D+GIGM K DL+ NLGTIARSGT  F++ L   +  D  +IGQFGVGFYS+++VA++V VT+ K  +D+ Y+WES+  G + V+   S     RGT++ L++K+++
Sbjct:    8 FDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSEAELVAGDSNFKITVKGDKNNGQVIIRDNGIGMNKEDLIENLGTIARSGTANFLKNLSGDSKKDNMLIGQFGVGFYSSFMVADKVTVTSRKAGEDKVYVWESEGEGEYIVSS--SDREFSRGTEIALHIKKEE 182          
The following BLAST results are available for this feature:
BLAST of FC920358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_METEP2.496e-3847.89Chaperone protein htpG OS=Methylobacterium extorqu... [more]
HTPG_METC42.496e-3847.89Chaperone protein htpG OS=Methylobacterium chlorom... [more]
HTPG_VIBFI3.260e-3845.95Chaperone protein htpG (Fragment) OS=Vibrio fische... [more]
HTPG_VIBF13.260e-3845.95Chaperone protein htpG OS=Vibrio fischeri (strain ... [more]
HTPG_RICB83.260e-3846.33Chaperone protein htpG OS=Rickettsia bellii (strai... [more]
HTPG_RHOPB3.260e-3845.76Chaperone protein htpG OS=Rhodopseudomonas palustr... [more]
HTPG_PSEMY3.260e-3848.63Chaperone protein htpG OS=Pseudomonas mendocina (s... [more]
HTPG_CHLCH3.260e-3846.70Chaperone protein htpG OS=Chlorobium chlorochromat... [more]
HTPG_VIBHB4.257e-3847.03Chaperone protein htpG OS=Vibrio harveyi (strain A... [more]
HTPG_RICBR4.257e-3846.33Chaperone protein htpG OS=Rickettsia bellii (strai... [more]

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Properties
Property NameValue
Genbank descriptionC32007C07EF RVDevelop1 Citrus clementina cDNA clone C32007C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920358 ID=FC920358; Name=FC920358; organism=Citrus clementina; type=EST; length=765bp
TTCGCTTTATAAAAATCTCTCTGCGCAAGCAAAAGCAAAAGCAAAAGCAA
TTCTCTTCGGTATTCTTGTTTCCAATTTTTTTCTTTTGTTTATTCTGTGT
TGTGAGGAAGAGCAATGGCGGACACTGAGACATTCGCATTCCAGGCAGAG
ATCAACCAGCTGTTGAGTTTGATCATCAATACTTTCTACAGCAACAAGGA
GATTTTCCTTCGTGAACTCATCAGCAACTCCTCTGATGCTTTGGACAAGA
TTCGATTCGAGAGCCTGACGGACAAGAGCAAGCTCGATGGACAACCAGAG
CTTTTCATCAGAATCATCCCTGACAAGGCTAACAAGACGCTCACTATTGT
TGATAGCGGTATCGGCATGACCAAAGCAGATTTGGTAAATAATTTGGGTA
CAATTGCGAGATCCGGGACCAAGGAGTTTATGGAGGCTTTGCAGGCCGGG
GCTGATGTGTCAATGATTGGTCAATTTGGTGTTGGTTTCTATTCGGCTTA
CCTTGTTGCTGAGAGGGTTGTTGTGACTACAAAGCACAATGACGATGAGC
AATACATCTGGGAATCACAAGCTGGTGGTTCTTTCACTGTTACCAGGGAT
GTTAGTGGAGAGCCCCTTGGTAGAGGTACCAAGATGACTCTGTACCTCAA
GGAGGATCAGCTTGAGTACTTGGAGGAGAGGAGAATTAGGACCTTGTGAA
GAGCACTCTGAATCATCAGCTCCCCTATTACTCTGGACTGAGAGACACTG
AGAAGAATTAGCGAT
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