FC920358

Overview
NameFC920358
Unique NameFC920358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_TREPA (Chaperone protein htpG OS=Treponema pallidum GN=htpG PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.673e-32
Identity = 82/186 (44.09%), Postives = 120/186 (64.52%), Query Frame = 1
Query:  133 FAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL--QAGADVSMIGQFGVGFYSAYLVAERV-VVTTKHNDDEQYIWESQAGGSFTVTR-DVSGEPL-------GRGTKMTLYLKED 657
            + FQ E++QLL+LII++ YS+KEIFLRELISN+SDALDK+++E+L D +      E  I I  ++  + L + D+GIGM   DL  NLGTIARSGTK F+  L      D ++IGQFGVGFYSA++VA +V V+T K  ++  + W S+   ++T+   D +  P+         GT + L+L ++
Sbjct:    4 YEFQTEVSQLLTLIIHSLYSHKEIFLRELISNASDALDKLKYEALVDGTYKQLHCEARIDIAFEEDAQRLVVRDTGIGMNAEDLRANLGTIARSGTKAFLSTLTRDQKQDSNLIGQFGVGFYSAFMVASKVEVITKKAAENTVWKWTSEGQNAYTLDEVDAAAFPVLEGVAEGSAGTCVVLHLSQE 189          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_DESVH (Chaperone protein htpG OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=htpG PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.673e-32
Identity = 79/184 (42.93%), Postives = 122/184 (66.30%), Query Frame = 1
Query:  136 AFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELF--IRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGAD------VSMIGQFGVGFYSAYLVAERVVVTTKH--NDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            AF+ E+ ++L +I ++ Y+N+EIFLREL+SN+SDALDK+RF  +  +      P+L   I I  DK  + LTI D+G+GMT+ +L++NLGTIARSG+++F+  L A  +       S+IG+FGVGFY+ ++VA+RV VT++     +  + W S   G FTV  + +G+   RGT +  +L+ED
Sbjct:    9 AFRTEVRKMLHIITHSLYTNREIFLRELVSNASDALDKLRF--IRSRGDAVVAPDLAPGIDISVDKEARILTIADTGVGMTRQELMDNLGTIARSGSEQFVADLAAAENAKDADAASIIGRFGVGFYAVFMVADRVEVTSRSYIEGEAAHTWTSDGLGEFTV-EEATGDIPQRGTVIKAHLRED 189          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_DESDG (Chaperone protein htpG OS=Desulfovibrio desulfuricans (strain G20) GN=htpG PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.491e-32
Identity = 78/184 (42.39%), Postives = 119/184 (64.67%), Query Frame = 1
Query:  118 ADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL-QAGADVS-MIGQFGVGFYSAYLVAERVVVTTKHNDDEQ--YIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            A  E   F+ E+ +LL +I ++ Y+N+EIFLREL+SN+SDALDK+RF     ++      +L I I  ++  +TLT+ D+GIGMT+ +L++NLGTIA SG++ F++ L + G   S +IG+FGVGFY+ ++VA+ V VTT+   D    + W S   GSF +   +      RGT++ + LKED
Sbjct:    7 AAAEKHEFRTEVRKLLHIITHSLYTNREIFLRELVSNASDALDKLRFAQTRGEAAPAADLDLNIAITVNEETRTLTVSDTGIGMTRQELIDNLGTIASSGSERFLKELAEKGEQASNIIGRFGVGFYAVFMVADSVTVTTRSALDASGAWRWTSDGLGSFELEEALDAPE--RGTRIDIRLKED 188          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_MYCLE (Chaperone protein htpG OS=Mycobacterium leprae GN=htpG PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 79/191 (41.36%), Postives = 119/191 (62.30%), Query Frame = 1
Query:  118 ADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKS---KLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQA-------GADVSMIGQFGVGFYSAYLVAERV-VVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            A  E   FQAE  QLL L++++ YSNK+ FLRELISN+SDALDK+R E+  +K    +     +L I I  DK  + LT+ D+GIGMT+A++V+ +GT+A+SGT +  + L A        A   +IGQFG+GFYS+++VA +V ++T K  +     W S    ++T+    S +   +GT +TL+LK +
Sbjct:    3 AQVEQLEFQAEARQLLDLMVHSVYSNKDAFLRELISNASDALDKLRLEAFRNKDLDPRTVDTSDLHIEIEVDKNTRILTVRDNGIGMTRAEVVDLIGTLAKSGTAKLRQKLHAAKNLKDTAASEGLIGQFGIGFYSSFMVANKVELLTRKAGETAATRWSSDGEATYTIE---SVDEAPQGTSVTLHLKPE 190          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_BUCCC (Chaperone protein htpG OS=Buchnera aphidicola subsp. Cinara cedri GN=htpG PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31
Identity = 82/186 (44.09%), Postives = 116/186 (62.37%), Query Frame = 1
Query:  130 TFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELF---IRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ---AGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYI---WESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQ 660
            T  FQ+E+ +LL L+I++ YSNKEIFLRELISN+SDA++KIRFE L    K   +  L+   I+I   K  K + I D+GIGMT  +++ NLGTIA+SGTK F+  +Q          IGQFGVGFYS+++V+  V V T+H  +++ I   W S+  G ++V +    E    GT + L LK  +
Sbjct:    8 THTFQSEVKELLHLMIHSLYSNKEIFLRELISNASDAIEKIRFEKLYSLKKY--RENLYTPKIKISIKKDEKKIIISDNGIGMTYKEVIKNLGTIAKSGTKSFLNKIQNIEKKEKNDFIGQFGVGFYSSFIVSNSVSVYTRHAKEKKNIGTLWISEGKGKYSVEKISKEE---HGTIVELSLKSSE 188          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_PORGI (Chaperone protein htpG OS=Porphyromonas gingivalis GN=htpG PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.894e-18
Identity = 54/171 (31.58%), Postives = 98/171 (57.31%), Query Frame = 1
Query:  154 NQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQP-ELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERV-VVTTKHNDDEQYI-WESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            + +  +I    YS+ EIFLRE++SN+ DA  K++  +LT   +  G+  +L + +  D+  +T+T+ D G+GMT+ ++   +  IA S  +EF+E  +     ++IG FG+GFYSA++V+ERV V+T    +D   + W       +T+      +   RGT + +++ E+
Sbjct:   12 DNIFPVIKKFLYSDHEIFLREIVSNAVDATQKLK--TLTSVGEFKGETGDLRVTVSVDEVARTITVSDRGVGMTEEEVEKYINQIAFSSAEEFLEKYKDDK-AAIIGHFGLGFYSAFMVSERVDVITRSFREDATAVKWSCDGSPEYTLE---PADKADRGTDIVMHIDEE 176          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_PORG3 (Chaperone protein htpG OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=htpG PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.424e-17
Identity = 53/171 (30.99%), Postives = 98/171 (57.31%), Query Frame = 1
Query:  154 NQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQP-ELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERV-VVTTKHNDDEQYI-WESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            + +  +I    YS+ +IFLRE++SN+ DA  K++  +LT   +  G+  +L + +  D+  +T+T+ D G+GMT+ ++   +  IA S  +EF+E  +     ++IG FG+GFYSA++V+ERV V+T    +D   + W       +T+      +   RGT + +++ E+
Sbjct:   12 DNIFPVIKKFLYSDHKIFLREIVSNAVDATQKLK--TLTSVGEFKGETGDLRVTVSVDEVARTITVSDRGVGMTEEEVEKYINQIAFSSAEEFLEKYKDDK-AAIIGHFGLGFYSAFMVSERVDVITRSFREDATAVKWSCDGSPEYTLE---PADKADRGTDIVMHIDEE 176          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_BACTN (Chaperone protein htpG OS=Bacteroides thetaiotaomicron GN=htpG PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.860e-17
Identity = 58/169 (34.32%), Postives = 96/169 (56.80%), Query Frame = 1
Query:  160 LLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQ-PELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERV-VVTTKHNDDEQYI-WESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            +  +I    YS+ EIFLREL+SN+ DA  K+   +L    +  G+  +L I +  +    T+TI D GIG+T  ++   +  IA SG  +F+E  +  A+ ++IG FG+GFYSA++VA++V ++T  + D+ Q I W       FT+      +   RG+ + LY+ +D
Sbjct:   13 IFPIIKKFLYSDHEIFLRELVSNAVDATQKLN--TLASIGEFKGELGDLTIHV--ELGKDTITISDRGIGLTAEEIEKYINQIAFSGANDFLEKYKDDAN-AIIGHFGLGFYSAFMVAKKVEIITKSYRDEAQAIKWTCDGSPEFTIE---EVDKADRGSDIILYIDDD 173          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_BACFR (Chaperone protein htpG OS=Bacteroides fragilis GN=htpG PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.410e-17
Identity = 58/169 (34.32%), Postives = 96/169 (56.80%), Query Frame = 1
Query:  160 LLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQ-PELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERV-VVTTKHNDDEQYI-WESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            +  +I    YS+ EIFLREL+SN+ DA  K+   +L   S+  G+  +L + +   K   T+TI D GIG+T  ++   +  IA SG  +F+E  +  A+ ++IG FG+GFYSA++V+++V ++T  + +  Q + W       FT+      E   RGT + LY+ +D
Sbjct:   13 IFPIIKKFLYSDHEIFLRELVSNAVDATQKLN--TLASISEFKGELGDLTVHVSLGK--DTITISDRGIGLTAEEIDKYINQIAFSGANDFLEKYKNDAN-AIIGHFGLGFYSAFMVSKKVEIITKSYKEGAQAVKWTCDGSPEFTLE---EVEKADRGTDIVLYIDDD 173          
BLAST of FC920358 vs. ExPASy Swiss-Prot
Match: HTPG_BACFN (Chaperone protein htpG OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=htpG PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.410e-17
Identity = 58/169 (34.32%), Postives = 96/169 (56.80%), Query Frame = 1
Query:  160 LLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQ-PELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERV-VVTTKHNDDEQYI-WESQAGGSFTVTRDVSGEPLGRGTKMTLYLKED 657
            +  +I    YS+ EIFLREL+SN+ DA  K+   +L   S+  G+  +L + +   K   T+TI D GIG+T  ++   +  IA SG  +F+E  +  A+ ++IG FG+GFYSA++V+++V ++T  + +  Q + W       FT+      E   RGT + LY+ +D
Sbjct:   13 IFPIIKKFLYSDHEIFLRELVSNAVDATQKLN--TLASISEFKGELGDLTVHVSLGK--DTITISDRGIGLTAEEIDKYINQIAFSGANDFLEKYKNDAN-AIIGHFGLGFYSAFMVSKKVEIITKSYKEGAQAVKWTCDGSPEFTLE---EVEKADRGTDIVLYIDDD 173          
The following BLAST results are available for this feature:
BLAST of FC920358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_TREPA2.673e-3244.09Chaperone protein htpG OS=Treponema pallidum GN=ht... [more]
HTPG_DESVH2.673e-3242.93Chaperone protein htpG OS=Desulfovibrio vulgaris (... [more]
HTPG_DESDG3.491e-3242.39Chaperone protein htpG OS=Desulfovibrio desulfuric... [more]
HTPG_MYCLE5.954e-3241.36Chaperone protein htpG OS=Mycobacterium leprae GN=... [more]
HTPG_BUCCC5.041e-3144.09Chaperone protein htpG OS=Buchnera aphidicola subs... [more]
HTPG_PORGI4.894e-1831.58Chaperone protein htpG OS=Porphyromonas gingivalis... [more]
HTPG_PORG31.424e-1730.99Chaperone protein htpG OS=Porphyromonas gingivalis... [more]
HTPG_BACTN1.860e-1734.32Chaperone protein htpG OS=Bacteroides thetaiotaomi... [more]
HTPG_BACFR5.410e-1734.32Chaperone protein htpG OS=Bacteroides fragilis GN=... [more]
HTPG_BACFN5.410e-1734.32Chaperone protein htpG OS=Bacteroides fragilis (st... [more]

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Properties
Property NameValue
Genbank descriptionC32007C07EF RVDevelop1 Citrus clementina cDNA clone C32007C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920358 ID=FC920358; Name=FC920358; organism=Citrus clementina; type=EST; length=765bp
TTCGCTTTATAAAAATCTCTCTGCGCAAGCAAAAGCAAAAGCAAAAGCAA
TTCTCTTCGGTATTCTTGTTTCCAATTTTTTTCTTTTGTTTATTCTGTGT
TGTGAGGAAGAGCAATGGCGGACACTGAGACATTCGCATTCCAGGCAGAG
ATCAACCAGCTGTTGAGTTTGATCATCAATACTTTCTACAGCAACAAGGA
GATTTTCCTTCGTGAACTCATCAGCAACTCCTCTGATGCTTTGGACAAGA
TTCGATTCGAGAGCCTGACGGACAAGAGCAAGCTCGATGGACAACCAGAG
CTTTTCATCAGAATCATCCCTGACAAGGCTAACAAGACGCTCACTATTGT
TGATAGCGGTATCGGCATGACCAAAGCAGATTTGGTAAATAATTTGGGTA
CAATTGCGAGATCCGGGACCAAGGAGTTTATGGAGGCTTTGCAGGCCGGG
GCTGATGTGTCAATGATTGGTCAATTTGGTGTTGGTTTCTATTCGGCTTA
CCTTGTTGCTGAGAGGGTTGTTGTGACTACAAAGCACAATGACGATGAGC
AATACATCTGGGAATCACAAGCTGGTGGTTCTTTCACTGTTACCAGGGAT
GTTAGTGGAGAGCCCCTTGGTAGAGGTACCAAGATGACTCTGTACCTCAA
GGAGGATCAGCTTGAGTACTTGGAGGAGAGGAGAATTAGGACCTTGTGAA
GAGCACTCTGAATCATCAGCTCCCCTATTACTCTGGACTGAGAGACACTG
AGAAGAATTAGCGAT
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