FC920365

Overview
NameFC920365
Unique NameFC920365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_COXBR (Chaperone protein htpG OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.640e-27
Identity = 59/113 (52.21%), Postives = 86/113 (76.11%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +S+  + ET +F+AE+ QLL L+ ++ YSNKEIFLRELISNSSDA DK+R+++L+D +  +   +L I I  DK N T++I D+GIGM++ +++ NLGTIA+SGT+ F E LA
Sbjct:    1 MSLQPQAETLSFEAEVKQLLHLVAHSLYSNKEIFLRELISNSSDAADKLRYQALSDAALYENDADLKIWIDFDKDNRTITIRDNGIGMSREEVIENLGTIAKSGTRAFRELLA 113          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_BURCH (Chaperone protein htpG OS=Burkholderia cenocepacia (strain HI2424) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.640e-27
Identity = 61/106 (57.55%), Postives = 79/106 (74.53%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE L D +  +  P L I I  DK   T++I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEGLADNALYENDPNLRIRIGYDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFTKLS 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_BURCA (Chaperone protein htpG OS=Burkholderia cenocepacia (strain AU 1054) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.640e-27
Identity = 61/106 (57.55%), Postives = 79/106 (74.53%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE L D +  +  P L I I  DK   T++I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEGLADNALYENDPNLRIRIGYDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFTKLS 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJR (Chaperone protein htpG OS=Campylobacter jejuni (strain RM1221) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.447e-27
Identity = 64/105 (60.95%), Postives = 78/105 (74.29%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 458
            FQ E+NQLL L+I++ YSNKEIFLRELISN+SDALDK+ F S++D      + E  I I  DK   TLSI D+GIGM K DL+NNLGTIA+SGTK F+E L+  A
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDA 107          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJJ (Chaperone protein htpG OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.447e-27
Identity = 64/105 (60.95%), Postives = 78/105 (74.29%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 458
            FQ E+NQLL L+I++ YSNKEIFLRELISN+SDALDK+ F S++D      + E  I I  DK   TLSI D+GIGM K DL+NNLGTIA+SGTK F+E L+  A
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDA 107          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJE (Chaperone protein htpG OS=Campylobacter jejuni GN=htpG PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.447e-27
Identity = 64/105 (60.95%), Postives = 78/105 (74.29%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 458
            FQ E+NQLL L+I++ YSNKEIFLRELISN+SDALDK+ F S++D      + E  I I  DK   TLSI D+GIGM K DL+NNLGTIA+SGTK F+E L+  A
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDA 107          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJD (Chaperone protein htpG OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.447e-27
Identity = 64/105 (60.95%), Postives = 78/105 (74.29%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 458
            FQ E+NQLL L+I++ YSNKEIFLRELISN+SDALDK+ F S++D      + E  I I  DK   TLSI D+GIGM K DL+NNLGTIA+SGTK F+E L+  A
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKNDLINNLGTIAKSGTKSFLENLSGDA 107          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJ8 (Chaperone protein htpG OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.447e-27
Identity = 64/105 (60.95%), Postives = 78/105 (74.29%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 458
            FQ E+NQLL L+I++ YSNKEIFLRELISN+SDALDK+ F S++D      + E  I I  DK   TLSI D+GIGM K DL+NNLGTIA+SGTK F+E L+  A
Sbjct:    3 FQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDA 107          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_BURCM (Chaperone protein htpG OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.447e-27
Identity = 61/106 (57.55%), Postives = 79/106 (74.53%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE L D +  +  P L I I  DK   T++I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEGLADNALYENDPNLRIRIGFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFTKLS 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_PSEAE (Chaperone protein htpG OS=Pseudomonas aeruginosa GN=htpG PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.880e-27
Identity = 59/113 (52.21%), Postives = 86/113 (76.11%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +S+ ++ ET  FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RFE+L +   L+   EL I +  DK  NT+++ D+GIGM++ D+V +LGTIA+SGT +F++ L+
Sbjct:    1 MSVETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFEALANPELLEGGAELKIRVSFDKEANTVTLEDNGIGMSREDVVTHLGTIAKSGTADFLKNLS 113          
The following BLAST results are available for this feature:
BLAST of FC920365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_COXBR2.640e-2752.21Chaperone protein htpG OS=Coxiella burnetii (strai... [more]
HTPG_BURCH2.640e-2757.55Chaperone protein htpG OS=Burkholderia cenocepacia... [more]
HTPG_BURCA2.640e-2757.55Chaperone protein htpG OS=Burkholderia cenocepacia... [more]
HTPG_CAMJR3.447e-2760.95Chaperone protein htpG OS=Campylobacter jejuni (st... [more]
HTPG_CAMJJ3.447e-2760.95Chaperone protein htpG OS=Campylobacter jejuni sub... [more]
HTPG_CAMJE3.447e-2760.95Chaperone protein htpG OS=Campylobacter jejuni GN=... [more]
HTPG_CAMJD3.447e-2760.95Chaperone protein htpG OS=Campylobacter jejuni sub... [more]
HTPG_CAMJ83.447e-2760.95Chaperone protein htpG OS=Campylobacter jejuni sub... [more]
HTPG_BURCM3.447e-2757.55Chaperone protein htpG OS=Burkholderia ambifaria (... [more]
HTPG_PSEAE5.880e-2752.21Chaperone protein htpG OS=Pseudomonas aeruginosa G... [more]

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Properties
Property NameValue
Genbank descriptionC32007D04EF RVDevelop1 Citrus clementina cDNA clone C32007D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920365 ID=FC920365; Name=FC920365; organism=Citrus clementina; type=EST; length=467bp
GACACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTTC
GCTTCCAAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGA
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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