FC920365

Overview
NameFC920365
Unique NameFC920365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_VESOH (Chaperone protein htpG OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.003e-26
Identity = 56/105 (53.33%), Postives = 86/105 (81.90%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            +T +FQ E++QLL L+I++ YSNKEIFLRELISN+SDA+DK++F+SL+D + ++ +  L IHI  +K  NT++I D+GIGM++ ++  N+GTIA SGTK+F+++L
Sbjct:    5 QTHSFQTEVSQLLHLMIHSLYSNKEIFLRELISNASDAVDKLKFKSLSDDTLIEGKEALQIHIDVNKDANTITITDNGIGMSEVEVNKNIGTIANSGTKKFLKSL 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_BURPS (Chaperone protein htpG OS=Burkholderia pseudomallei GN=htpG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.003e-26
Identity = 58/106 (54.72%), Postives = 81/106 (76.42%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +T +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE+L + +  ++ P L I +  DK   T++I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEALENNALYESDPNLRIRLSFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLS 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_BURP6 (Chaperone protein htpG OS=Burkholderia pseudomallei (strain 668) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.003e-26
Identity = 58/106 (54.72%), Postives = 81/106 (76.42%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +T +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE+L + +  ++ P L I +  DK   T++I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEALENNALYESDPNLRIRLSFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLS 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_BURP1 (Chaperone protein htpG OS=Burkholderia pseudomallei (strain 1710b) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.003e-26
Identity = 58/106 (54.72%), Postives = 81/106 (76.42%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +T +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE+L + +  ++ P L I +  DK   T++I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEALENNALYESDPNLRIRLSFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLS 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_BURP0 (Chaperone protein htpG OS=Burkholderia pseudomallei (strain 1106a) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.003e-26
Identity = 58/106 (54.72%), Postives = 81/106 (76.42%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +T +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE+L + +  ++ P L I +  DK   T++I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEALENNALYESDPNLRIRLSFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLS 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_BURMS (Chaperone protein htpG OS=Burkholderia mallei (strain SAVP1) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.003e-26
Identity = 58/106 (54.72%), Postives = 81/106 (76.42%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +T +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE+L + +  ++ P L I +  DK   T++I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEALENNALYESDPNLRIRLSFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLS 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_BURMA (Chaperone protein htpG OS=Burkholderia mallei GN=htpG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.003e-26
Identity = 58/106 (54.72%), Postives = 81/106 (76.42%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +T +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE+L + +  ++ P L I +  DK   T++I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEALENNALYESDPNLRIRLSFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLS 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_BURM9 (Chaperone protein htpG OS=Burkholderia mallei (strain NCTC 10229) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.003e-26
Identity = 58/106 (54.72%), Postives = 81/106 (76.42%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +T +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE+L + +  ++ P L I +  DK   T++I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEALENNALYESDPNLRIRLSFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLS 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_BURM7 (Chaperone protein htpG OS=Burkholderia mallei (strain NCTC 10247) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.003e-26
Identity = 58/106 (54.72%), Postives = 81/106 (76.42%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +T +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE+L + +  ++ P L I +  DK   T++I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEALENNALYESDPNLRIRLSFDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLS 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_PSEU2 (Chaperone protein htpG OS=Pseudomonas syringae pv. syringae (strain B728a) GN=htpG PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.310e-26
Identity = 58/113 (51.33%), Postives = 86/113 (76.11%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +S+ ++ ET  FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA+DK+RFE+L+    L+   EL I +  DK   T+++ D+GIGM++ D++ +LGTIA+SGT +FM+ L+
Sbjct:    1 MSVETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFEALSKPELLEGGAELKIRVSFDKDAKTVTLEDNGIGMSREDVITHLGTIAKSGTADFMKNLS 113          
The following BLAST results are available for this feature:
BLAST of FC920365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_VESOH1.003e-2653.33Chaperone protein htpG OS=Vesicomyosocius okutanii... [more]
HTPG_BURPS1.003e-2654.72Chaperone protein htpG OS=Burkholderia pseudomalle... [more]
HTPG_BURP61.003e-2654.72Chaperone protein htpG OS=Burkholderia pseudomalle... [more]
HTPG_BURP11.003e-2654.72Chaperone protein htpG OS=Burkholderia pseudomalle... [more]
HTPG_BURP01.003e-2654.72Chaperone protein htpG OS=Burkholderia pseudomalle... [more]
HTPG_BURMS1.003e-2654.72Chaperone protein htpG OS=Burkholderia mallei (str... [more]
HTPG_BURMA1.003e-2654.72Chaperone protein htpG OS=Burkholderia mallei GN=h... [more]
HTPG_BURM91.003e-2654.72Chaperone protein htpG OS=Burkholderia mallei (str... [more]
HTPG_BURM71.003e-2654.72Chaperone protein htpG OS=Burkholderia mallei (str... [more]
HTPG_PSEU21.310e-2651.33Chaperone protein htpG OS=Pseudomonas syringae pv.... [more]

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Properties
Property NameValue
Genbank descriptionC32007D04EF RVDevelop1 Citrus clementina cDNA clone C32007D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920365 ID=FC920365; Name=FC920365; organism=Citrus clementina; type=EST; length=467bp
GACACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTTC
GCTTCCAAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGA
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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