FC920365

Overview
NameFC920365
Unique NameFC920365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_NITMU (Chaperone protein htpG OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=htpG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.812e-26
Identity = 55/105 (52.38%), Postives = 82/105 (78.10%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            E   FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RFE+LTD +  ++  +L I +  DK   T+++ D+GIGM++ ++++++GTIA+SGT+EF +AL
Sbjct:    8 EHLNFQTEVKQLLKLMIHSLYSNKEIFLRELISNASDAADKLRFEALTDGALYESDSDLKIRVSYDKEARTITVADNGIGMSRQEVIDHIGTIAKSGTREFFDAL 112          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_MARAV (Chaperone protein htpG OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=htpG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.812e-26
Identity = 58/113 (51.33%), Postives = 82/113 (72.57%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +++ +  ET  FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF +L D    +   +L I +  DK   T++I D+GIGMT+ D++ NLGTIA+SGT EF++ L+
Sbjct:    1 MTVEANKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAEDKLRFAALKDDKLFEGDSDLKIRLDYDKDAGTITIADNGIGMTRDDVIANLGTIAKSGTAEFLKQLS 113          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_KLEP7 (Chaperone protein htpG OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=htpG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.812e-26
Identity = 56/107 (52.34%), Postives = 81/107 (75.70%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 452
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF +L+     +   EL + +  DK N TL+I D+GIGM + +++++LGTIA+SGTK F+E++ +
Sbjct:    5 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSQPDLYEGDGELRVRVSFDKDNRTLTIADNGIGMNREEVIDHLGTIAKSGTKAFLESMGS 111          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_HAEPS (Chaperone protein htpG OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=htpG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.812e-26
Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 452
            M++  ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF++L+     +   EL + I  D+   T++I D+GIGM++  ++++LGTIA+SGTKEF+ AL +
Sbjct:    1 MSTNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAADKLRFKALSQPELYEGDGELRVRISIDEALGTITISDNGIGMSREQVIDHLGTIAKSGTKEFLNALGS 112          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_ECOUT (Chaperone protein htpG OS=Escherichia coli (strain UTI89 / UPEC) GN=htpG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.812e-26
Identity = 56/107 (52.34%), Postives = 82/107 (76.64%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 452
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK   TL+I D+G+GMT+ +++++LGTIA+SGTK F+E+L +
Sbjct:    5 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGS 111          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_ECOLI (Chaperone protein htpG OS=Escherichia coli (strain K12) GN=htpG PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.812e-26
Identity = 56/107 (52.34%), Postives = 82/107 (76.64%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 452
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK   TL+I D+G+GMT+ +++++LGTIA+SGTK F+E+L +
Sbjct:    5 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGS 111          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_ECOLC (Chaperone protein htpG OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=htpG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.812e-26
Identity = 56/107 (52.34%), Postives = 82/107 (76.64%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 452
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK   TL+I D+G+GMT+ +++++LGTIA+SGTK F+E+L +
Sbjct:    5 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGS 111          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_ECOL6 (Chaperone protein htpG OS=Escherichia coli O6 GN=htpG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.812e-26
Identity = 56/107 (52.34%), Postives = 82/107 (76.64%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 452
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK   TL+I D+G+GMT+ +++++LGTIA+SGTK F+E+L +
Sbjct:    5 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGS 111          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_ECOL5 (Chaperone protein htpG OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=htpG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.812e-26
Identity = 56/107 (52.34%), Postives = 82/107 (76.64%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 452
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK   TL+I D+G+GMT+ +++++LGTIA+SGTK F+E+L +
Sbjct:    5 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGS 111          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_ECOK1 (Chaperone protein htpG OS=Escherichia coli O1:K1 / APEC GN=htpG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.812e-26
Identity = 56/107 (52.34%), Postives = 82/107 (76.64%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 452
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF +L++    +   EL + +  DK   TL+I D+G+GMT+ +++++LGTIA+SGTK F+E+L +
Sbjct:    5 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGS 111          
The following BLAST results are available for this feature:
BLAST of FC920365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_NITMU3.812e-2652.38Chaperone protein htpG OS=Nitrosospira multiformis... [more]
HTPG_MARAV3.812e-2651.33Chaperone protein htpG OS=Marinobacter aquaeolei (... [more]
HTPG_KLEP73.812e-2652.34Chaperone protein htpG OS=Klebsiella pneumoniae su... [more]
HTPG_HAEPS3.812e-2650.89Chaperone protein htpG OS=Haemophilus parasuis ser... [more]
HTPG_ECOUT3.812e-2652.34Chaperone protein htpG OS=Escherichia coli (strain... [more]
HTPG_ECOLI3.812e-2652.34Chaperone protein htpG OS=Escherichia coli (strain... [more]
HTPG_ECOLC3.812e-2652.34Chaperone protein htpG OS=Escherichia coli (strain... [more]
HTPG_ECOL63.812e-2652.34Chaperone protein htpG OS=Escherichia coli O6 GN=h... [more]
HTPG_ECOL53.812e-2652.34Chaperone protein htpG OS=Escherichia coli O6:K15:... [more]
HTPG_ECOK13.812e-2652.34Chaperone protein htpG OS=Escherichia coli O1:K1 /... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32007D04EF RVDevelop1 Citrus clementina cDNA clone C32007D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920365 ID=FC920365; Name=FC920365; organism=Citrus clementina; type=EST; length=467bp
GACACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTTC
GCTTCCAAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGA
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
back to top