FC920365

Overview
NameFC920365
Unique NameFC920365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_SULDN (Chaperone protein htpG OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=htpG PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.659e-24
Identity = 58/102 (56.86%), Postives = 74/102 (72.55%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            FQ E NQ+L+L+I++ YSNKEIF+REL+SN+SDALDK+    LT+           I II DK   TL+I DSGIGM + DL+NNLGTIA+SGTK F+E L+
Sbjct:    6 FQTEANQILNLMIHSLYSNKEIFIRELVSNASDALDKLNMLVLTNDEYKGVNFSPRIDIIADKEAKTLTIKDSGIGMNEEDLMNNLGTIAKSGTKAFLENLS 107          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_NATTJ (Chaperone protein htpG OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=htpG PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.659e-24
Identity = 56/103 (54.37%), Postives = 76/103 (73.79%), Query Frame = 3
Query:  135 TFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEA 443
            T  FQAE  +LL ++IN+ YSNKEIFLRELISN+SDA+DK+ ++SLTD S    + + +I I  DK N  L I D+GIGMT+ +L +N+G IARSG+ +F +A
Sbjct:    3 TQEFQAETKRLLDIVINSIYSNKEIFLRELISNASDAIDKLYYKSLTDNSLDFNKDDYYIKITVDKENRQLKISDTGIGMTRQELEDNIGVIARSGSLDFKKA 105          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_METRJ (Chaperone protein htpG OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=htpG PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.659e-24
Identity = 54/110 (49.09%), Postives = 77/110 (70.00%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            M+   E   F AE+ +LL L+++  YS++EIFLREL++N++DA+D+ RFE+LT  +     P+  + I PDK   TL++ D+GIGMTK DL  NLGTIARSGT+ F + L
Sbjct:    1 MSETIERHEFGAEVGRLLDLVVHALYSDREIFLRELVANAADAMDRRRFEALTSAASA-LPPDAKVRIAPDKEARTLTVSDAGIGMTKEDLATNLGTIARSGTRAFSQTL 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_EHRCR (Chaperone protein htpG OS=Ehrlichia chaffeensis (strain Arkansas) GN=htpG PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.659e-24
Identity = 52/109 (47.71%), Postives = 79/109 (72.48%), Query Frame = 3
Query:  129 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAG 455
            +E   F AE+ ++L L+I++ Y+NK+IFLREL+SN+SDA DK+R+ESL+++  +D   +  I I  D+  N L I D+GIGM + DL++NLGTIA SGT+ F++ +  G
Sbjct:    7 SEKLKFDAEVGKVLKLVIHSLYTNKDIFLRELVSNASDACDKLRYESLSNQDLIDQDSDFKIVISVDQDKNRLYISDNGIGMNRQDLIDNLGTIAHSGTQRFLDEINNG 115          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_PSYCK (Chaperone protein htpG OS=Psychrobacter cryohalolentis (strain K5) GN=htpG PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.948e-24
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            E +   F+AE+ QLL L+ ++ YSN +IF+REL+SN+SDA DK+RFE+  D S  +   EL I I  D+   T++  D+GIGM +AD + NLGTIA+SGTK F++ L+
Sbjct:   23 ELKKHTFEAEVAQLLHLVTHSLYSNSDIFVRELVSNASDACDKLRFEATNDDSLYEDDGELKIRIAVDEDAKTITFTDNGIGMNEADAIENLGTIAKSGTKAFLDKLS 130          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_PSYA2 (Chaperone protein htpG OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=htpG PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.948e-24
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            E +   F+AE+ QLL L+ ++ YSN +IF+REL+SN+SDA DK+RFE+  D S  +   EL I I  D+   T++  D+GIGM +AD + NLGTIA+SGTK F++ L+
Sbjct:   13 ELKKHTFEAEVAQLLHLVTHSLYSNSDIFVRELVSNASDACDKLRFEATNDDSLYEDDGELRIRIAVDEDAKTITFTDNGIGMNEADAIENLGTIAKSGTKAFLDKLS 120          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_PSEA6 (Chaperone protein htpG OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=htpG PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.948e-24
Identity = 52/106 (49.06%), Postives = 78/106 (73.58%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA DK+RF++L++ S  +   +L + +  DK   +++I D+GIGM +A ++ +LGTIA+SGT EF   L+
Sbjct:    8 ETHGFQTEVKQLLQLMIHSLYSNKEIFLRELVSNAADAADKLRFKALSNDSLYEGDGDLCVKLSIDKDAGSITISDNGIGMDRASVIEHLGTIAKSGTSEFFSNLS 113          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_METS4 (Chaperone protein htpG OS=Methylobacterium sp. (strain 4-46) GN=htpG PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.948e-24
Identity = 56/111 (50.45%), Postives = 78/111 (70.27%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            M+   E  AF AE+ +LL L+++  YS +EIFLREL++N++DA+D+ RF +LTD + L    +  + I PDK   TL+I D GIGM+K DL  NLGTIARSGT+ F ++LA
Sbjct:    1 MSETLERHAFGAEVGRLLDLVVHALYSEREIFLRELVANAADAVDRRRFGALTDPA-LSLPADAKVRIRPDKAARTLAISDPGIGMSKEDLAQNLGTIARSGTRAFSQSLA 110          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_METPB (Chaperone protein htpG OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=htpG PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.948e-24
Identity = 56/110 (50.91%), Postives = 79/110 (71.82%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            M+   E   F AE+ +LL L+++  YS++EIFLREL++N++DA D+ RFE+LT+++ L    +  + I PDK   TL+I DSGIGM+K DL  NLGTIARSGT+ F +AL
Sbjct:    1 MSETVERHEFGAEVGRLLDLVVHALYSDREIFLRELVANAADATDRRRFEALTNEA-LALPSDARVLIAPDKAARTLTISDSGIGMSKEDLAQNLGTIARSGTRAFSQAL 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_CLOBM (Chaperone protein htpG OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=htpG PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.948e-24
Identity = 55/101 (54.46%), Postives = 76/101 (75.25%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEF 434
            ET  F+AE  +LL L+IN+ Y++KEIFLRELISNSSDA+DKI +++LT+ S    + + +I ++ DK N  L I D+GIGMTK +L NNLG IA+SG+ +F
Sbjct:    2 ETKQFKAESKRLLDLMINSIYTHKEIFLRELISNSSDAMDKIYYKTLTEDSLKFERDDYYIKVVFDKENRVLKIADTGIGMTKEELENNLGVIAKSGSLQF 102          
The following BLAST results are available for this feature:
BLAST of FC920365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_SULDN4.659e-2456.86Chaperone protein htpG OS=Sulfurimonas denitrifica... [more]
HTPG_NATTJ4.659e-2454.37Chaperone protein htpG OS=Natranaerobius thermophi... [more]
HTPG_METRJ4.659e-2449.09Chaperone protein htpG OS=Methylobacterium radioto... [more]
HTPG_EHRCR4.659e-2447.71Chaperone protein htpG OS=Ehrlichia chaffeensis (s... [more]
HTPG_PSYCK7.948e-2449.07Chaperone protein htpG OS=Psychrobacter cryohalole... [more]
HTPG_PSYA27.948e-2449.07Chaperone protein htpG OS=Psychrobacter arcticus (... [more]
HTPG_PSEA67.948e-2449.06Chaperone protein htpG OS=Pseudoalteromonas atlant... [more]
HTPG_METS47.948e-2450.45Chaperone protein htpG OS=Methylobacterium sp. (st... [more]
HTPG_METPB7.948e-2450.91Chaperone protein htpG OS=Methylobacterium populi ... [more]
HTPG_CLOBM7.948e-2454.46Chaperone protein htpG OS=Clostridium botulinum (s... [more]

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Properties
Property NameValue
Genbank descriptionC32007D04EF RVDevelop1 Citrus clementina cDNA clone C32007D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920365 ID=FC920365; Name=FC920365; organism=Citrus clementina; type=EST; length=467bp
GACACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTTC
GCTTCCAAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGA
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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