FC920365

Overview
NameFC920365
Unique NameFC920365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_VIBFI (Chaperone protein htpG (Fragment) OS=Vibrio fischeri GN=htpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.038e-23
Identity = 53/106 (50.00%), Postives = 80/106 (75.47%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF++L++    +   +L + +  ++  NTL+I D+GIGM++ D++ +LGTIA+SGT +F   L+
Sbjct:    9 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDASDKLRFKALSNGDLYEGNADLGVKLSFNEAANTLTISDNGIGMSREDVIEHLGTIAKSGTADFFSKLS 114          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_VIBF1 (Chaperone protein htpG OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.038e-23
Identity = 53/106 (50.00%), Postives = 80/106 (75.47%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF++L++    +   +L + +  ++  NTL+I D+GIGM++ D++ +LGTIA+SGT +F   L+
Sbjct:    9 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDASDKLRFKALSNGDLYEGNADLGVKLSFNEAANTLTISDNGIGMSREDVIEHLGTIAKSGTADFFSKLS 114          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_CLOTE (Chaperone protein htpG OS=Clostridium tetani GN=htpG PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.038e-23
Identity = 57/109 (52.29%), Postives = 80/109 (73.39%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA--GADV 464
            F+AE  +LL L+IN+ Y+NKEIFLRELISN+SDA+DK  + SLTD++    + + +I IIP+K   TL+IID+GIGM+  +L NNLGTIA+SG+  F   + +  G D+
Sbjct:    6 FKAESKRLLDLMINSIYTNKEIFLRELISNASDAIDKRYYRSLTDENISFNKKDFYIRIIPNKEERTLTIIDTGIGMSVEELENNLGTIAKSGSLAFKNKMESKEGIDI 114          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_CLOAB (Chaperone protein htpG OS=Clostridium acetobutylicum GN=htpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.038e-23
Identity = 56/97 (57.73%), Postives = 72/97 (74.23%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEF 434
            F+AE  +LL L+IN+ Y+NKEIFLRELISN+SDA+DK  + SL D +    + + +I I  DK N TL+I D+GIGMTK DL NNLGTIA+SG+  F
Sbjct:    6 FKAESKRLLDLMINSIYTNKEIFLRELISNASDAIDKCYYRSLVDTNITFNKDDFYIRISADKENKTLTITDTGIGMTKDDLENNLGTIAKSGSFAF 102          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: TRAP1_RAT (Heat shock protein 75 kDa, mitochondrial OS=Rattus norvegicus GN=Trap1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.356e-23
Identity = 56/108 (51.85%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            FQAE  +LL ++  + YS KE+F+RELISN+SDAL+K+R + + +   L   PE+ IH+  D    T++I D+GIGMTK +LV+NLGTIARSG+K F+EAL   A+ S
Sbjct:   92 FQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKRVCEGQVL---PEMEIHLQTDAEKGTITIQDTGIGMTKEELVSNLGTIARSGSKAFLEALQHQAETS 196          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: TRAP1_HUMAN (Heat shock protein 75 kDa, mitochondrial OS=Homo sapiens GN=TRAP1 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 1.356e-23
Identity = 56/118 (47.46%), Postives = 82/118 (69.49%), Query Frame = 3
Query:  114 SMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            S+   T    FQAE  +LL ++  + YS KE+F+RELISN+SDAL+K+R + ++D   L   PE+ IH+  +    T++I D+GIGMT+ +LV+NLGTIARSG+K F++AL   A+ S
Sbjct:   80 SVQGSTSKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSDGQAL---PEMEIHLQTNAEKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLDALQNQAEAS 194          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_METNO (Chaperone protein htpG OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.356e-23
Identity = 57/111 (51.35%), Postives = 77/111 (69.37%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            M+   E  AF AE+ +LL L+++  YS +EIFLREL++N++DA+D+ RF +LTD + L    E  + I PDK   TL+I D GIGM K DL  NLGTIARSGT+ F ++LA
Sbjct:    1 MSETLERHAFGAEVGRLLDLVVHALYSEREIFLRELVANAADAVDRRRFGALTDPA-LALPAEAKVRIRPDKAARTLTISDPGIGMGKEDLAQNLGTIARSGTRAFSQSLA 110          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_METEP (Chaperone protein htpG OS=Methylobacterium extorquens (strain PA1) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.356e-23
Identity = 56/114 (49.12%), Postives = 80/114 (70.18%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 458
            M+   E   F AE+ +LL L+++  YS++EIFLREL++N++DA D+ RFE+LT+++ L    +  + I PDK   TL+I D+GIGM+K DL  NLGTIARSGT+ F +AL   A
Sbjct:    1 MSETVERHEFGAEVGRLLDLVVHALYSDREIFLRELVANAADATDRRRFEALTNEA-LALPSDARVLIAPDKAARTLTISDAGIGMSKEDLAQNLGTIARSGTRAFSQALGERA 113          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_METC4 (Chaperone protein htpG OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.356e-23
Identity = 56/114 (49.12%), Postives = 80/114 (70.18%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 458
            M+   E   F AE+ +LL L+++  YS++EIFLREL++N++DA D+ RFE+LT+++ L    +  + I PDK   TL+I D+GIGM+K DL  NLGTIARSGT+ F +AL   A
Sbjct:    1 MSETVERHEFGAEVGRLLDLVVHALYSDREIFLRELVANAADATDRRRFEALTNEA-LALPSDARVLIAPDKAARTLTISDAGIGMSKEDLAQNLGTIARSGTRAFSQALGERA 113          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_FUSNN (Chaperone protein htpG OS=Fusobacterium nucleatum subsp. nucleatum GN=htpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.356e-23
Identity = 55/101 (54.46%), Postives = 77/101 (76.24%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            F+AE  +LL+L+I++ Y+NKEIFLRELISN++DA+DK++F+SLTD   L    +  I I  DK N TL+I D+GIGMT  ++ +N+GTIA+SG+K F E L
Sbjct:    8 FKAETKELLNLMIHSIYTNKEIFLRELISNANDAIDKLKFQSLTDTDILKDNDKFRIDISVDKDNRTLTISDNGIGMTYEEVDDNIGTIAKSGSKLFKEQL 108          
The following BLAST results are available for this feature:
BLAST of FC920365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_VIBFI1.038e-2350.00Chaperone protein htpG (Fragment) OS=Vibrio fische... [more]
HTPG_VIBF11.038e-2350.00Chaperone protein htpG OS=Vibrio fischeri (strain ... [more]
HTPG_CLOTE1.038e-2352.29Chaperone protein htpG OS=Clostridium tetani GN=ht... [more]
HTPG_CLOAB1.038e-2357.73Chaperone protein htpG OS=Clostridium acetobutylic... [more]
TRAP1_RAT1.356e-2351.85Heat shock protein 75 kDa, mitochondrial OS=Rattus... [more]
TRAP1_HUMAN1.356e-2347.46Heat shock protein 75 kDa, mitochondrial OS=Homo s... [more]
HTPG_METNO1.356e-2351.35Chaperone protein htpG OS=Methylobacterium nodulan... [more]
HTPG_METEP1.356e-2349.12Chaperone protein htpG OS=Methylobacterium extorqu... [more]
HTPG_METC41.356e-2349.12Chaperone protein htpG OS=Methylobacterium chlorom... [more]
HTPG_FUSNN1.356e-2354.46Chaperone protein htpG OS=Fusobacterium nucleatum ... [more]

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Properties
Property NameValue
Genbank descriptionC32007D04EF RVDevelop1 Citrus clementina cDNA clone C32007D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920365 ID=FC920365; Name=FC920365; organism=Citrus clementina; type=EST; length=467bp
GACACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTTC
GCTTCCAAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGA
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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