FC920365

Overview
NameFC920365
Unique NameFC920365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_ANAPZ (Chaperone protein htpG OS=Anaplasma phagocytophilum (strain HZ) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.356e-23
Identity = 53/108 (49.07%), Postives = 79/108 (73.15%), Query Frame = 3
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            ++ E   F AE+ ++LSL++++ Y+NK+IFLREL+SN+SDA DK+R E L++   ++   EL + I  DK +  LSI D+GIGM + +L+ NLGTIA SGT+ F+EAL
Sbjct:    2 ADIEELKFDAEVGKVLSLVVHSLYTNKDIFLRELLSNASDACDKLRHEFLSNHDLMEEGEELKVVISVDKDSKQLSICDNGIGMNRDELIANLGTIASSGTQRFLEAL 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HSP82_ENCCU (Heat shock protein 90 OS=Encephalitozoon cuniculi GN=HSP90 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.356e-23
Identity = 60/121 (49.59%), Postives = 82/121 (67.77%), Query Frame = 3
Query:   93 LVERQVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIR---FESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            LVE ++    SET    F+ ++NQ++  +I + YS+KE+FLREL+SNSSDA DK++   F+       LD    L I IIP+K N TL+I D+GIGMTK DL+N +GTIA SGTK+F E +
Sbjct:    8 LVEGKIKDKHSETH--GFEVDVNQMMDTMIKSVYSSKELFLRELVSNSSDACDKLKALYFQLREKGCVLDPVTSLGIEIIPNKDNRTLTIKDNGIGMTKPDLMNFIGTIASSGTKKFREEM 126          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_CHLCH (Chaperone protein htpG OS=Chlorobium chlorochromatii (strain CaD3) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.312e-23
Identity = 54/105 (51.43%), Postives = 77/105 (73.33%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            + F ++AE+ QLL LII++ Y++ EI+LRELISN+SDAL K RF +LTD+  LD   EL I +  +    ++ I DSGIGMT+ +L+ NLGT+A+SGT  FM++L
Sbjct:   14 QEFEYKAEMKQLLDLIIHSLYTHPEIYLRELISNASDALSKARFNALTDQDMLDKDAELAIRLTLNAEEKSVVIEDSGIGMTEEELIANLGTVAKSGTLGFMQSL 118          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_BDEBA (Chaperone protein htpG OS=Bdellovibrio bacteriovorus GN=htpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.312e-23
Identity = 54/99 (54.55%), Postives = 73/99 (73.74%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFME 440
            F AEI QLL ++I++ YS+KEIFLREL+SN+SDA+DK++F SLT  S L    +  I + P+    TL IID+GIGMT+ ++V  +GTIARSG K FM+
Sbjct:    8 FNAEIKQLLDIVIHSLYSHKEIFLRELLSNASDAIDKLKFNSLTHPSLLPENWQPAIRLEPNSETKTLKIIDNGIGMTQEEVVEFIGTIARSGAKAFMQ 106          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_ANAMM (Chaperone protein htpG OS=Anaplasma marginale (strain St. Maries) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.312e-23
Identity = 51/110 (46.36%), Postives = 80/110 (72.73%), Query Frame = 3
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAG 455
            + E   F AE+ ++LSL++++ Y+NK+IFLRE+ISN+SDA DK+R+   +D+S ++A  EL I I  D+    L++ D+GIGM++ +L++NLGTIA SGT+ F+E    G
Sbjct:    3 DVEELKFSAEVGKVLSLVVHSLYTNKDIFLREVISNASDACDKLRYLFCSDQSLMEAGEELRIVISVDRDRRELTVRDNGIGMSRKELIDNLGTIASSGTQRFLEEFKGG 112          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_ALKOO (Chaperone protein htpG OS=Alkaliphilus oremlandii (strain OhILAs) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.312e-23
Identity = 59/113 (52.21%), Postives = 79/113 (69.91%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEA--LAAGADV 464
            ET  F+AE  +LL L+I++ Y+ KEIFLRELISN+SDA+DKI + +LTD++    + + +I IIPDK    L IID+GIGMTK +L  NLG IA+SG+  F  A  L  G D+
Sbjct:    2 ETKQFKAESKRLLDLMIHSIYTQKEIFLRELISNASDAIDKIYYRALTDEALNFNKEDYYIKIIPDKEKRILRIIDTGIGMTKEELEENLGVIAKSGSLAFKSAHELKDGYDI 114          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_COLP3 (Chaperone protein htpG OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.020e-23
Identity = 51/113 (45.13%), Postives = 82/113 (72.57%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +S  ++ +  AF ++  ++L L+I++ YSNKEIFLREL+SN++DA DK+RF++L+D +  +   +L + +  DK NNTL+I D+GIGM   +++ +LGTIA+SGT EF   L+
Sbjct:    1 MSETNQVQNHAFASDNAKILQLMIHSLYSNKEIFLRELVSNAADAADKLRFKALSDNTLYENDGDLRVRVSCDKENNTLTISDNGIGMNVDEVIEHLGTIAKSGTAEFFSQLS 113          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: TRAP1_MOUSE (Heat shock protein 75 kDa, mitochondrial OS=Mus musculus GN=Trap1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.944e-23
Identity = 60/130 (46.15%), Postives = 85/130 (65.38%), Query Frame = 3
Query:   99 ERQVVSMASETETFA-------FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E  + S+ S TE          FQAE  +LL ++  + YS KE+F+RELISN+SDAL+K+R + + +   L   PE+ IH+  D    T++I D+GIGMT+ +LV+NLGTIARSG+K F+EAL   A+ S
Sbjct:   70 EESLHSIISNTEAVRGSVSKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVCEGQVL---PEMEIHLQTDAKKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLEALQNQAETS 196          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_ALISL (Chaperone protein htpG OS=Aliivibrio salmonicida (strain LFI1238) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.944e-23
Identity = 54/106 (50.94%), Postives = 78/106 (73.58%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF++L++    +   +L + I  +   NTL+I D+GIGM + D++ +LGTIA+SGT +F   L+
Sbjct:   10 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDASDKLRFKALSNGDLYEGNADLGVKISFNVEANTLTISDNGIGMGREDVIEHLGTIAKSGTADFFSKLS 115          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_STRCO (Chaperone protein htpG OS=Streptomyces coelicolor GN=htpG PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.151e-23
Identity = 58/116 (50.00%), Postives = 79/116 (68.10%), Query Frame = 3
Query:  129 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL-----AAGAD 461
            TETF FQ E  QLL L+I++ YSNK++FLREL+SN+SDALDK+R  +L D +      +L I +  DK   TL++ D+GIGM+  ++   +GTIA SGT +F+E L     AAGAD
Sbjct:    3 TETFEFQVEARQLLQLMIHSVYSNKDVFLRELVSNASDALDKLRLAALRDDAPDADVSDLHIELEVDKDARTLTVRDNGIGMSYDEVTRLIGTIANSGTAKFLEELREAKDAAGAD 118          
The following BLAST results are available for this feature:
BLAST of FC920365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_ANAPZ1.356e-2349.07Chaperone protein htpG OS=Anaplasma phagocytophilu... [more]
HSP82_ENCCU1.356e-2349.59Heat shock protein 90 OS=Encephalitozoon cuniculi ... [more]
HTPG_CHLCH2.312e-2351.43Chaperone protein htpG OS=Chlorobium chlorochromat... [more]
HTPG_BDEBA2.312e-2354.55Chaperone protein htpG OS=Bdellovibrio bacteriovor... [more]
HTPG_ANAMM2.312e-2346.36Chaperone protein htpG OS=Anaplasma marginale (str... [more]
HTPG_ALKOO2.312e-2352.21Chaperone protein htpG OS=Alkaliphilus oremlandii ... [more]
HTPG_COLP33.020e-2345.13Chaperone protein htpG OS=Colwellia psychrerythrae... [more]
TRAP1_MOUSE3.944e-2346.15Heat shock protein 75 kDa, mitochondrial OS=Mus mu... [more]
HTPG_ALISL3.944e-2350.94Chaperone protein htpG OS=Aliivibrio salmonicida (... [more]
HTPG_STRCO5.151e-2350.00Chaperone protein htpG OS=Streptomyces coelicolor ... [more]

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Properties
Property NameValue
Genbank descriptionC32007D04EF RVDevelop1 Citrus clementina cDNA clone C32007D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920365 ID=FC920365; Name=FC920365; organism=Citrus clementina; type=EST; length=467bp
GACACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTTC
GCTTCCAAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGA
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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