FC920365

Overview
NameFC920365
Unique NameFC920365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_TREPA (Chaperone protein htpG OS=Treponema pallidum GN=htpG PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.339e-22
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 3
Query:  138 FAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            + FQ E++QLL+LII++ YS+KEIFLRELISN+SDALDK+++E+L D +      E  I I  ++    L + D+GIGM   DL  NLGTIARSGTK F+  L
Sbjct:    4 YEFQTEVSQLLTLIIHSLYSHKEIFLRELISNASDALDKLKYEALVDGTYKQLHCEARIDIAFEEDAQRLVVRDTGIGMNAEDLRANLGTIARSGTKAFLSTL 106          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_MYCPA (Chaperone protein htpG OS=Mycobacterium paratuberculosis GN=htpG PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.339e-22
Identity = 55/110 (50.00%), Postives = 76/110 (69.09%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            M +  E   FQAE  QLL L++++ YSNK+ FLRELISN+SDALDK+R E+  +K       +L I I  DK   TL+I D+GIGMT+A++V+ +GT+A+SGT E  + L
Sbjct:    1 MNARVEQLEFQAEARQLLDLMVHSVYSNKDSFLRELISNASDALDKLRLEAFRNKDLDVDTSDLHIQIEVDKDARTLTIRDNGIGMTRAEVVDLIGTLAKSGTAELRQQL 110          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_MYCA1 (Chaperone protein htpG OS=Mycobacterium avium (strain 104) GN=htpG PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.339e-22
Identity = 55/110 (50.00%), Postives = 76/110 (69.09%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            M +  E   FQAE  QLL L++++ YSNK+ FLRELISN+SDALDK+R E+  +K       +L I I  DK   TL+I D+GIGMT+A++V+ +GT+A+SGT E  + L
Sbjct:    1 MNARVEQLEFQAEARQLLDLMVHSVYSNKDSFLRELISNASDALDKLRLEAFRNKDLDVDTSDLHIQIEVDKDARTLTIRDNGIGMTRAEVVDLIGTLAKSGTAELRQQL 110          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_RICM5 (Chaperone protein htpG OS=Rickettsia massiliae (strain Mtu5) GN=htpG PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.361e-22
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            M    E   F AE+ ++L+L+I++ YSNKEIF+RELISN+SDA DK+R+ S ++   +       I +  DK N  + I D+GIGM K DL+ NLGTIARSGT  F+++L+
Sbjct:    1 MIMTQEKKKFDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNSELVAGDSNFKITVKVDKDNGQIIIRDNGIGMNKDDLIENLGTIARSGTANFLKSLS 111          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_RICTY (Chaperone protein htpG OS=Rickettsia typhi GN=htpG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.696e-22
Identity = 51/102 (50.00%), Postives = 72/102 (70.59%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            F AE+ ++L+L+I++ YSNKEIF+RELISN+SDA DK+R+ S ++   +       I +  DK N  + I D+GIGM K DL+ NLGTIARSGT  F++ L+
Sbjct:    8 FDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNSELISGDSNFKIIVKVDKDNEQIIIRDNGIGMNKEDLIENLGTIARSGTANFLKNLS 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_RICRS (Chaperone protein htpG OS=Rickettsia rickettsii (strain Sheila Smith) GN=htpG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.696e-22
Identity = 51/102 (50.00%), Postives = 73/102 (71.57%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            F AE+ ++L+L+I++ YSNKEIF+RELISN+SDA DK+R+ S ++   +       I +  DK N  + I D+GIGM K DL+ NLGTIARSGT  F+++L+
Sbjct:    8 FDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNSELVAGDSNFKITVKVDKDNGQIIIRDNGIGMNKDDLIENLGTIARSGTANFLKSLS 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_RICRO (Chaperone protein htpG OS=Rickettsia rickettsii (strain Iowa) GN=htpG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.696e-22
Identity = 51/102 (50.00%), Postives = 73/102 (71.57%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            F AE+ ++L+L+I++ YSNKEIF+RELISN+SDA DK+R+ S ++   +       I +  DK N  + I D+GIGM K DL+ NLGTIARSGT  F+++L+
Sbjct:    8 FDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNSELVAGDSNFKITVKVDKDNGQIIIRDNGIGMNKDDLIENLGTIARSGTANFLKSLS 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_RICCK (Chaperone protein htpG OS=Rickettsia canadensis (strain McKiel) GN=htpG PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.439e-22
Identity = 51/102 (50.00%), Postives = 73/102 (71.57%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            F AE+ ++L+L+I++ YSNKEIF+RELISN+SDA DK+R+ S ++ + +       I +  DK N  + I D+GIGM K DL+ NLGTIARSGT  F++ L+
Sbjct:    8 FDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNNTLVAGDSNFKITVKIDKNNGQIIIRDNGIGMNKEDLIENLGTIARSGTANFLKNLS 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: TRAP1_BOVIN (Heat shock protein 75 kDa, mitochondrial OS=Bos taurus GN=TRAP1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.715e-22
Identity = 50/106 (47.17%), Postives = 78/106 (73.58%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGAD 461
            FQAE  +LL ++  + YS KE+F+RELISN+SDAL+K+R + +++   L   P++ IH+  D    T++I D+G+GM++ +LV+NLGTIARSG+K F++AL   A+
Sbjct:   89 FQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSEGQAL---PDMEIHLQTDADRGTITIQDTGVGMSREELVSNLGTIARSGSKAFLDALQNQAE 191          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_RICPR (Chaperone protein htpG OS=Rickettsia prowazekii GN=htpG PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.715e-22
Identity = 51/102 (50.00%), Postives = 72/102 (70.59%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            F AE+ ++L+L+I++ YSNKEIF+RELISN+SDA DK+R+ S ++   +       I +  DK N  + I D+GIGM K DL+ NLGTIARSGT  F++ L+
Sbjct:    8 FDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNSELIAGDSNFKIIVKVDKDNGQIIIRDNGIGMNKEDLIENLGTIARSGTANFLKNLS 109          
The following BLAST results are available for this feature:
BLAST of FC920365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_TREPA3.339e-2253.40Chaperone protein htpG OS=Treponema pallidum GN=ht... [more]
HTPG_MYCPA3.339e-2250.00Chaperone protein htpG OS=Mycobacterium paratuberc... [more]
HTPG_MYCA13.339e-2250.00Chaperone protein htpG OS=Mycobacterium avium (str... [more]
HTPG_RICM54.361e-2247.75Chaperone protein htpG OS=Rickettsia massiliae (st... [more]
HTPG_RICTY5.696e-2250.00Chaperone protein htpG OS=Rickettsia typhi GN=htpG... [more]
HTPG_RICRS5.696e-2250.00Chaperone protein htpG OS=Rickettsia rickettsii (s... [more]
HTPG_RICRO5.696e-2250.00Chaperone protein htpG OS=Rickettsia rickettsii (s... [more]
HTPG_RICCK7.439e-2250.00Chaperone protein htpG OS=Rickettsia canadensis (s... [more]
TRAP1_BOVIN9.715e-2247.17Heat shock protein 75 kDa, mitochondrial OS=Bos ta... [more]
HTPG_RICPR9.715e-2250.00Chaperone protein htpG OS=Rickettsia prowazekii GN... [more]

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Properties
Property NameValue
Genbank descriptionC32007D04EF RVDevelop1 Citrus clementina cDNA clone C32007D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920365 ID=FC920365; Name=FC920365; organism=Citrus clementina; type=EST; length=467bp
GACACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTTC
GCTTCCAAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGA
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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