FC920365

Overview
NameFC920365
Unique NameFC920365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_MYCBO (Chaperone protein htpG OS=Mycobacterium bovis GN=htpG PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.657e-21
Identity = 53/110 (48.18%), Postives = 74/110 (67.27%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            M +  E   FQAE  QLL L++++ YSNK+ FLRELISN+SDALDK+R E+L +K       +L I I  DK   TL++ D+GIGM + ++V+ +GT+A+SGT E    L
Sbjct:    1 MNAHVEQLEFQAEARQLLDLMVHSVYSNKDAFLRELISNASDALDKLRIEALRNKDLEVDTSDLHIEIDADKAARTLTVRDNGIGMAREEVVDLIGTLAKSGTAELRAQL 110          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_RICCN (Chaperone protein htpG OS=Rickettsia conorii GN=htpG PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.164e-21
Identity = 50/102 (49.02%), Postives = 73/102 (71.57%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            F AE+ ++L+L+I++ YSNKEIF+RELISN+SDA DK+R+ S ++   +       I +  DK +  + I D+GIGM K DL+ NLGTIARSGT  F+++L+
Sbjct:    8 FDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNSELVAGDSNFKITVKVDKDHRQIIIRDNGIGMNKDDLIENLGTIARSGTANFLKSLS 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_MYCUA (Chaperone protein htpG OS=Mycobacterium ulcerans (strain Agy99) GN=htpG PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.164e-21
Identity = 54/110 (49.09%), Postives = 74/110 (67.27%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            M +  E   FQAE  QLL L+I++ YSNK+ FLRELISN+SDALDK+R E+  +K       +L I    DK   TL++ D+GIGMT+A++V+ +GT+A+SGT E    L
Sbjct:    1 MNARVEQLEFQAEARQLLDLMIHSVYSNKDSFLRELISNASDALDKLRIEAFRNKDLEVDTSDLHIETEADKGARTLTVRDNGIGMTRAEVVDLIGTLAKSGTAELRAQL 110          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_RICFE (Chaperone protein htpG OS=Rickettsia felis GN=htpG PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.827e-21
Identity = 50/102 (49.02%), Postives = 71/102 (69.61%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            F AE+ ++L+L+I++ YSNKEIF+RELISN+SDA DK+R+ S ++           I +  DK    + I D+GIGM K DL+ NLGTIARSGT  F+++L+
Sbjct:    8 FDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNSELTSGDSNFKITVKVDKDKGQIIIRDNGIGMNKDDLIENLGTIARSGTANFLKSLS 109          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_CLOPS (Chaperone protein htpG OS=Clostridium perfringens (strain SM101 / Type A) GN=htpG PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.827e-21
Identity = 49/97 (50.52%), Postives = 72/97 (74.23%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEF 434
            F+AE  +LL ++IN+ Y+N+EIFLRELISN+SDA+DK+ +++L D S    + + +I I P+K   TL+I D GIGMT+ +L  NLG IA+SG+ +F
Sbjct:    6 FKAESKRLLDIVINSIYTNREIFLRELISNASDAIDKVYYKTLGDSSLTFNKDDYYIKIKPNKEERTLTISDKGIGMTEKELDENLGVIAKSGSLQF 102          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_CLOPE (Chaperone protein htpG OS=Clostridium perfringens GN=htpG PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.827e-21
Identity = 49/97 (50.52%), Postives = 72/97 (74.23%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEF 434
            F+AE  +LL ++IN+ Y+N+EIFLRELISN+SDA+DK+ +++L D S    + + +I I P+K   TL+I D GIGMT+ +L  NLG IA+SG+ +F
Sbjct:    6 FKAESKRLLDIVINSIYTNREIFLRELISNASDAIDKVYYKTLGDSSLTFNKDDYYIKIKPNKEERTLTISDKGIGMTEKELDENLGVIAKSGSLQF 102          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_CLOP1 (Chaperone protein htpG OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=htpG PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.827e-21
Identity = 49/97 (50.52%), Postives = 72/97 (74.23%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEF 434
            F+AE  +LL ++IN+ Y+N+EIFLRELISN+SDA+DK+ +++L D S    + + +I I P+K   TL+I D GIGMT+ +L  NLG IA+SG+ +F
Sbjct:    6 FKAESKRLLDIVINSIYTNREIFLRELISNASDAIDKVYYKTLGDSSLTFNKDDYYIKIKPNKEERTLTISDKGIGMTEKELDENLGVIAKSGSLQF 102          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_AZOC5 (Chaperone protein htpG OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=htpG PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.827e-21
Identity = 52/115 (45.22%), Postives = 84/115 (73.04%), Query Frame = 3
Query:  120 ASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL--DAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 458
            A+  E+  F+A++ +LL L++++ YS+K++FLRELISN++DA +K+R+E++T  + L  DA+P + + I  D     L++ D+GIGM++ ++V  LGTIARSGTK FME + A A
Sbjct:    6 AAAPESRTFEADVAKLLHLMVHSVYSDKDVFLRELISNAADACEKLRYEAITTPALLGEDARPRITLAI--DAEGGRLTVEDNGIGMSRDEMVEALGTIARSGTKAFMERIEAAA 118          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_DESVH (Chaperone protein htpG OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=htpG PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.692e-21
Identity = 53/114 (46.49%), Postives = 81/114 (71.05%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELF--IHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 452
            MA+   + AF+ E+ ++L +I ++ Y+N+EIFLREL+SN+SDALDK+RF  +  +      P+L   I I  DK    L+I D+G+GMT+ +L++NLGTIARSG+++F+  LAA
Sbjct:    1 MATAPASHAFRTEVRKMLHIITHSLYTNREIFLRELVSNASDALDKLRF--IRSRGDAVVAPDLAPGIDISVDKEARILTIADTGVGMTRQELMDNLGTIARSGSEQFVADLAA 112          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_DESDG (Chaperone protein htpG OS=Desulfovibrio desulfuricans (strain G20) GN=htpG PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.822e-21
Identity = 49/106 (46.23%), Postives = 76/106 (71.70%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            E   F+ E+ +LL +I ++ Y+N+EIFLREL+SN+SDALDK+RF     ++   A  +L I I  ++   TL++ D+GIGMT+ +L++NLGTIA SG++ F++ LA
Sbjct:   10 EKHEFRTEVRKLLHIITHSLYTNREIFLRELVSNASDALDKLRFAQTRGEAAPAADLDLNIAITVNEETRTLTVSDTGIGMTRQELIDNLGTIASSGSERFLKELA 115          
The following BLAST results are available for this feature:
BLAST of FC920365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_MYCBO1.657e-2148.18Chaperone protein htpG OS=Mycobacterium bovis GN=h... [more]
HTPG_RICCN2.164e-2149.02Chaperone protein htpG OS=Rickettsia conorii GN=ht... [more]
HTPG_MYCUA2.164e-2149.09Chaperone protein htpG OS=Mycobacterium ulcerans (... [more]
HTPG_RICFE2.827e-2149.02Chaperone protein htpG OS=Rickettsia felis GN=htpG... [more]
HTPG_CLOPS2.827e-2150.52Chaperone protein htpG OS=Clostridium perfringens ... [more]
HTPG_CLOPE2.827e-2150.52Chaperone protein htpG OS=Clostridium perfringens ... [more]
HTPG_CLOP12.827e-2150.52Chaperone protein htpG OS=Clostridium perfringens ... [more]
HTPG_AZOC52.827e-2145.22Chaperone protein htpG OS=Azorhizobium caulinodans... [more]
HTPG_DESVH3.692e-2146.49Chaperone protein htpG OS=Desulfovibrio vulgaris (... [more]
HTPG_DESDG4.822e-2146.23Chaperone protein htpG OS=Desulfovibrio desulfuric... [more]

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Properties
Property NameValue
Genbank descriptionC32007D04EF RVDevelop1 Citrus clementina cDNA clone C32007D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920365 ID=FC920365; Name=FC920365; organism=Citrus clementina; type=EST; length=467bp
GACACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTTC
GCTTCCAAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGA
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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