FC920365

Overview
NameFC920365
Unique NameFC920365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_BACSU (Chaperone protein htpG OS=Bacillus subtilis GN=htpG PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.822e-21
Identity = 51/97 (52.58%), Postives = 71/97 (73.20%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEF 434
            F+AE  +LL ++IN+ Y+ KEIFLRELISNSSDA+DKI +++LTD +    +   +I +  DK   TL+I D+GIGMTK +L  +LGTIA+SG+  F
Sbjct:    6 FKAESKRLLDMMINSIYTQKEIFLRELISNSSDAIDKIYYKALTDDALTFDKDSYYIKVAADKDARTLTISDTGIGMTKDELEQHLGTIAKSGSLAF 102          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_BACSK (Chaperone protein htpG OS=Bacillus clausii (strain KSM-K16) GN=htpG PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.822e-21
Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEF 434
            FQAE  +LL +++N+ YS KEIFLRELISN+SDA+DK+ + SLTD S    +    I++  DK N  L + D+GIGMTK +L  NLGTIA+SG+  F
Sbjct:    6 FQAESKRLLEMMVNSIYSQKEIFLRELISNASDAIDKMYYRSLTDDSLSFEKDRYAIYVEADKDNRKLVMKDTGIGMTKEELEANLGTIAKSGSLAF 102          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_BUCCC (Chaperone protein htpG OS=Buchnera aphidicola subsp. Cinara cedri GN=htpG PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.074e-20
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 3
Query:  135 TFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ---PELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            T  FQ+E+ +LL L+I++ YSNKEIFLRELISN+SDA++KIRFE L    K       P++ I I   K    + I D+GIGMT  +++ NLGTIA+SGTK F+  +
Sbjct:    8 THTFQSEVKELLHLMIHSLYSNKEIFLRELISNASDAIEKIRFEKLYSLKKYRENLYTPKIKISI--KKDEKKIIISDNGIGMTYKEVIKNLGTIAKSGTKSFLNKI 112          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_RHOSR (Chaperone protein htpG OS=Rhodococcus sp. (strain RHA1) GN=htpG PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.832e-20
Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            M+++ E   FQAE  QLL L+I++ YSNK+ FLRELISN+SDALDK+R E+  +K       +L + I  D    TL++ D+GIGM+  ++V+ +GT+A+SGT +    L    D +
Sbjct:    1 MSTKIEQLEFQAETRQLLDLMIHSVYSNKDSFLRELISNASDALDKLRLEAFRNKELHVDTSDLHVEIEVDAEKRTLTVRDNGIGMSHDEVVDLIGTLAKSGTADLRRKLKEAKDAA 117          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_RHIME (Chaperone protein htpG OS=Rhizobium meliloti GN=htpG PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.832e-20
Identity = 49/110 (44.55%), Postives = 76/110 (69.09%), Query Frame = 3
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 452
            +  E   F+A++ +LL L++++ YS+K +FLRELISN++DA +K+R+E++     L + P   I +  D+ N  L I D+GIGM + +LV +LGTIARSGT+ FME + A
Sbjct:    6 TSVEKHVFEADVAKLLHLMVHSVYSDKNVFLRELISNAADACEKLRYEAIVAPELLGSDPASRITLTLDEENARLVIEDNGIGMGRDELVESLGTIARSGTRAFMERIEA 115          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_BORGA (Chaperone protein htpG OS=Borrelia garinii GN=htpG PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.393e-20
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            F  E+N LL LII++ YS+KEIFLRELISN+SDA+DK++F SLT++   +   E  I I  D  + ++ I D+GIGM + DL N+LG IA+SGTKEF+  L
Sbjct:    5 FDTEVNDLLYLIIHSLYSHKEIFLRELISNASDAIDKLKFLSLTNEKFKNIALEPKIEITFD--DKSILIKDNGIGMNEQDLTNHLGVIAKSGTKEFINNL 103          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_HELHP (Chaperone protein htpG OS=Helicobacter hepaticus GN=htpG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.125e-20
Identity = 52/102 (50.98%), Postives = 72/102 (70.59%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            FQ EI QLL L+I++ YS+KEIFLRELISN+SDALDK+ + +LT ++      E  I I  D+   T++I D+GIGM + D+  +LG IA+SGTK F+  L+
Sbjct:    7 FQTEITQLLDLMIHSLYSHKEIFLRELISNASDALDKLSYLTLTQENLKTLSFEPRIDISFDEEKKTITIEDNGIGMNENDMKEHLGIIAKSGTKSFLSQLS 108          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_BORBU (Chaperone protein htpG OS=Borrelia burgdorferi GN=htpG PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 4.082e-20
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            F  E+N LL LII++ YS+KEIFLRELISN+SDA+DK++F SLT++   +   E  I I  D  + ++ I D+GIGM + DL N+LG IA+SGTKEF+  L
Sbjct:    5 FDTEVNDLLYLIIHSLYSHKEIFLRELISNASDAIDKLKFLSLTNEKFKNIALEPKIEISFD--DKSILIKDNGIGMDEQDLTNHLGVIAKSGTKEFINNL 103          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: TRAP1_DICDI (TNF receptor-associated protein 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=trap1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.331e-20
Identity = 49/112 (43.75%), Postives = 73/112 (65.18%), Query Frame = 3
Query:  129 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL-DAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGAD 461
            +E  +FQ E  ++L ++  + Y+ KE+F+RELISN+SDA++K+R   LT+ S + DA     I I  D+ N TL I DSGIGMTK +++ NLG I  SG+ +F++ L    D
Sbjct:   98 SEKLSFQTETQKILHIVAESLYTEKEVFIRELISNASDAIEKVRHTQLTNASMIEDASIPFEIKISTDEDNKTLIIQDSGIGMTKDEMIKNLGKIGYSGSSDFIKKLGENPD 209          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HTPG_BORAP (Chaperone protein htpG OS=Borrelia afzelii (strain PKo) GN=htpG PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.962e-20
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            F  E+N LL LII++ YS+KEIFLRELISN+SDA+DK++F SLT++   +   E  I I  D  + ++ I D+GIGM + +L N+LG IA+SGTKEF+  L
Sbjct:    5 FDTEVNDLLYLIIHSLYSHKEIFLRELISNASDAIDKLKFLSLTNEKFKNIALEPKIEITFD--DKSILIKDNGIGMNEQELTNHLGVIAKSGTKEFINNL 103          
The following BLAST results are available for this feature:
BLAST of FC920365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_BACSU4.822e-2152.58Chaperone protein htpG OS=Bacillus subtilis GN=htp... [more]
HTPG_BACSK4.822e-2153.61Chaperone protein htpG OS=Bacillus clausii (strain... [more]
HTPG_BUCCC1.074e-2050.47Chaperone protein htpG OS=Buchnera aphidicola subs... [more]
HTPG_RHOSR1.832e-2043.59Chaperone protein htpG OS=Rhodococcus sp. (strain ... [more]
HTPG_RHIME1.832e-2044.55Chaperone protein htpG OS=Rhizobium meliloti GN=ht... [more]
HTPG_BORGA2.393e-2053.47Chaperone protein htpG OS=Borrelia garinii GN=htpG... [more]
HTPG_HELHP3.125e-2050.98Chaperone protein htpG OS=Helicobacter hepaticus G... [more]
HTPG_BORBU4.082e-2053.47Chaperone protein htpG OS=Borrelia burgdorferi GN=... [more]
TRAP1_DICDI5.331e-2043.75TNF receptor-associated protein 1 homolog, mitocho... [more]
HTPG_BORAP6.962e-2052.48Chaperone protein htpG OS=Borrelia afzelii (strain... [more]

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Properties
Property NameValue
Genbank descriptionC32007D04EF RVDevelop1 Citrus clementina cDNA clone C32007D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920365 ID=FC920365; Name=FC920365; organism=Citrus clementina; type=EST; length=467bp
GACACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTTC
GCTTCCAAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGA
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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