FC920365

Overview
NameFC920365
Unique NameFC920365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920365_ssr23 microsatellite FC920365_ssr23:23..38. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10211 contig Ccv1_Contig10211:1..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HS90B_MOUSE (Heat shock protein HSP 90-beta OS=Mus musculus GN=Hsp90ab1 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 3.431e-43
Identity = 88/114 (77.19%), Postives = 101/114 (88.60%), Query Frame = 3
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD+  EL I I+P+    TL+++D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDILPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 124          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HSP90_ASPFU (Heat shock protein 90 OS=Aspergillus fumigatus GN=hsp90 PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 5.853e-43
Identity = 88/113 (77.88%), Postives = 102/113 (90.27%), Query Frame = 3
Query:  129 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            +ETF FQAEI+QLLSLIINT YSNKEIFLRELISN+SDALDKIR++SL+D +KLD   +L I IIPDK N TL+I D+GIGMTKADL+NNLGTIARSGTK+FMEAL+AGAD+S
Sbjct:    3 SETFEFQAEISQLLSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPTKLDTGKDLRIDIIPDKENKTLTIRDTGIGMTKADLINNLGTIARSGTKQFMEALSAGADIS 115          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HS90B_CHICK (Heat shock cognate protein HSP 90-beta OS=Gallus gallus GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 5.853e-43
Identity = 90/121 (74.38%), Postives = 103/121 (85.12%), Query Frame = 3
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            QV     E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ESLTD SKLD   +L I I+P+  + TL+++D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    4 QVQHGEDEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDTGKDLKIDIVPNPRDPTLTLLDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 124          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HSP90_CAEEL (Heat shock protein 90 OS=Caenorhabditis elegans GN=daf-21 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 9.984e-43
Identity = 87/117 (74.36%), Postives = 102/117 (87.18%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            M+   ETFAFQAEI QL+SLIINTFYSNKEI+LRELISN+SDALDKIR+++LT+ S+LD   ELFI I P+K   TL+I+D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    1 MSENAETFAFQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDTGKELFIKITPNKEEKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 117          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HSP90_CAEBR (Heat shock protein 90 OS=Caenorhabditis briggsae GN=daf-21 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 9.984e-43
Identity = 87/117 (74.36%), Postives = 102/117 (87.18%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            M+   ETFAFQAEI QL+SLIINTFYSNKEI+LRELISN+SDALDKIR+++LT+ S+LD   ELFI I P+K   TL+I+D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    1 MSENAETFAFQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDTGKELFIKITPNKEEKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 117          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HS90B_DANRE (Heat shock protein HSP 90-beta OS=Danio rerio GN=hsp90ab1 PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.304e-42
Identity = 87/114 (76.32%), Postives = 101/114 (88.60%), Query Frame = 3
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E ETFAFQAEI QL+SLIINTFYSNKEIFLREL+SN+SDALDKIR+ESLTD +KLD+  +L I IIP+    TL++ID+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   10 EAETFAFQAEIAQLMSLIINTFYSNKEIFLRELVSNASDALDKIRYESLTDPTKLDSGKDLKIDIIPNVQERTLTLIDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 123          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HSP90_BRUPA (Heat shock protein 90 OS=Brugia pahangi GN=HSP90 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 8.452e-42
Identity = 85/112 (75.89%), Postives = 101/112 (90.18%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            ETFAFQAEI QL+SLIINTFYSNKEIFLRELISNSSDALDKIR+++LT+ ++L+   EL+I I P+K + TL+I+D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    8 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYQALTEPAELETGKELYIKITPNKADKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 119          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HSP83_LEIAM (Heat shock protein 83 OS=Leishmania amazonensis GN=HSP83 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 8.452e-42
Identity = 85/113 (75.22%), Postives = 98/113 (86.73%), Query Frame = 3
Query:  129 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            TETFAFQAEINQL+SLIINTFYSNKEIFLR++ISN+SDA DKIR++SLTD S L     L + ++PDK N TL++ D+GIGMTKADLVNNLGTIARSGTK FMEAL AGAD+S
Sbjct:    2 TETFAFQAEINQLMSLIINTFYSNKEIFLRDVISNASDACDKIRYQSLTDPSVLGDATRLCVRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGADMS 114          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HSP82_AJECA (Heat shock protein 82 OS=Ajellomyces capsulata GN=HSP82 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 8.452e-42
Identity = 87/113 (76.99%), Postives = 100/113 (88.50%), Query Frame = 3
Query:  129 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            +ETF FQAEI+QLLSLIINT YSNKEIFLRELISN SDALDKIR+++L+D SKL++  +L I I PDK N TL+I D+GIGMTKADLVNNLGTIARSGTK+FMEAL AGAD+S
Sbjct:    3 SETFEFQAEISQLLSLIINTVYSNKEIFLRELISNFSDALDKIRYKALSDPSKLESDKDLRIDITPDKENKTLTIRDTGIGMTKADLVNNLGTIARSGTKQFMEALTAGADIS 115          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HSP85_TRYCR (Heat shock-like 85 kDa protein OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.104e-41
Identity = 85/113 (75.22%), Postives = 99/113 (87.61%), Query Frame = 3
Query:  129 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            TETFAFQAEINQL+SLIINTFYSNKEIFLRELISNSSDA DKIR++SLT+++ L  +  L I ++PDK N TL++ D+GIGMTKA+LVNNLGTIARSGTK FMEAL AG D+S
Sbjct:    2 TETFAFQAEINQLMSLIINTFYSNKEIFLRELISNSSDACDKIRYQSLTNQAVLGDESHLRIRVVPDKANKTLTVEDTGIGMTKAELVNNLGTIARSGTKAFMEALEAGGDMS 114          
The following BLAST results are available for this feature:
BLAST of FC920365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HS90B_MOUSE3.431e-4377.19Heat shock protein HSP 90-beta OS=Mus musculus GN=... [more]
HSP90_ASPFU5.853e-4377.88Heat shock protein 90 OS=Aspergillus fumigatus GN=... [more]
HS90B_CHICK5.853e-4374.38Heat shock cognate protein HSP 90-beta OS=Gallus g... [more]
HSP90_CAEEL9.984e-4374.36Heat shock protein 90 OS=Caenorhabditis elegans GN... [more]
HSP90_CAEBR9.984e-4374.36Heat shock protein 90 OS=Caenorhabditis briggsae G... [more]
HS90B_DANRE1.304e-4276.32Heat shock protein HSP 90-beta OS=Danio rerio GN=h... [more]
HSP90_BRUPA8.452e-4275.89Heat shock protein 90 OS=Brugia pahangi GN=HSP90 P... [more]
HSP83_LEIAM8.452e-4275.22Heat shock protein 83 OS=Leishmania amazonensis GN... [more]
HSP82_AJECA8.452e-4276.99Heat shock protein 82 OS=Ajellomyces capsulata GN=... [more]
HSP85_TRYCR1.104e-4175.22Heat shock-like 85 kDa protein OS=Trypanosoma cruz... [more]

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Properties
Property NameValue
Genbank descriptionC32007D04EF RVDevelop1 Citrus clementina cDNA clone C32007D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920365 ID=FC920365; Name=FC920365; organism=Citrus clementina; type=EST; length=467bp
GACACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTTC
GCTTCCAAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGA
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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