FC920365

Overview
NameFC920365
Unique NameFC920365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920365_ssr23 microsatellite FC920365_ssr23:23..38. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10211 contig Ccv1_Contig10211:1..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HSP90_SCHPO (Heat shock protein 90 homolog OS=Schizosaccharomyces pombe GN=swo1 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 2.459e-41
Identity = 84/115 (73.04%), Postives = 99/115 (86.09%), Query Frame = 3
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            S TETF F+AEI+QL+SLIINT YSNKEIFLRELISN+SDALDKIR++SL+D   LDA+ +LFI I PDK N  LSI D+GIGMTK DL+NNLG IA+SGTK+FMEA A+GAD+S
Sbjct:    2 SNTETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEKDLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFMEAAASGADIS 116          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HSP90_CANAL (Heat shock protein 90 homolog OS=Candida albicans GN=HSP90 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.459e-41
Identity = 85/115 (73.91%), Postives = 100/115 (86.96%), Query Frame = 3
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            ++ ET  F AEI+QL+SLIINT YSNKEIFLRELISN+SDALDKIR+++L+D S+L+++PELFI IIP K    L I DSGIGMTKADLVNNLGTIA+SGTK FMEAL+AGADVS
Sbjct:    4 AKVETHEFTAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQALSDPSQLESEPELFIRIIPQKDQKVLEIRDSGIGMTKADLVNNLGTIAKSGTKSFMEALSAGADVS 118          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HSC90_DICDI (Heat shock cognate 90 kDa protein OS=Dictyostelium discoideum GN=hspD PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 5.478e-41
Identity = 86/116 (74.14%), Postives = 100/116 (86.21%), Query Frame = 3
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAG-ADVS 467
            S+ E F FQAEINQL+SLIINTFYSNKE+FLRELISN+SDALDKIR++SLTD S L+++ EL I IIPDKT  TL++IDSGIGMTK D+V NLGTIARSGTK FME L +G AD+S
Sbjct:    4 SQVERFTFQAEINQLMSLIINTFYSNKEVFLRELISNASDALDKIRYQSLTDASVLESKTELEIKIIPDKTAKTLTLIDSGIGMTKTDMVKNLGTIARSGTKNFMEQLQSGAADIS 119          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HSP82_YEAST (ATP-dependent molecular chaperone HSP82 OS=Saccharomyces cerevisiae GN=HSP82 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 7.911e-40
Identity = 82/113 (72.57%), Postives = 96/113 (84.96%), Query Frame = 3
Query:  129 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            +ETF FQAEI QL+SLIINT YSNKEIFLRELISN+SDALDKIR++SL+D  +L+ +P+LFI I P      L I DSGIGMTKA+L+NNLGTIA+SGTK FMEAL+AGADVS
Sbjct:    3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVS 115          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HSP82_ASHGO (Heat shock protein HSP82 OS=Ashbya gossypii GN=HSP82 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.762e-39
Identity = 82/115 (71.30%), Postives = 95/115 (82.61%), Query Frame = 3
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            S  ET+ FQAEI QL+SLIINT YSNKEIFLRELISN+SDALDKIR++SL+D   L++ PELFI + P      L I DSGIGMTKA+L+NNLGTIA+SGTK FMEAL+AGADVS
Sbjct:    2 SSQETYEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPKVLESDPELFIRLTPKPEEKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVS 116          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HSC82_YEAST (ATP-dependent molecular chaperone HSC82 OS=Saccharomyces cerevisiae GN=HSC82 PE=1 SV=4)

HSP 1 Score: 161.384 bits (407), Expect = 1.762e-39
Identity = 81/112 (72.32%), Postives = 95/112 (84.82%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            ETF FQAEI QL+SLIINT YSNKEIFLRELISN+SDALDKIR+++L+D  +L+ +P+LFI I P      L I DSGIGMTKA+L+NNLGTIA+SGTK FMEAL+AGADVS
Sbjct:    4 ETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQALSDPKQLETEPDLFIRITPKPEEKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVS 115          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HSP83_DROPB (Heat shock protein 83 (Fragment) OS=Drosophila pseudoobscura bogotana GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.302e-39
Identity = 85/117 (72.65%), Postives = 94/117 (80.34%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDALDKIR+ S TD  KL          IP+KT  TL+IID+GI MTK+DLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    1 MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYXSXTDPXKLXXXXXXXXXXIPNKTAGTLTIIDTGIXMTKSDLVNNLGTIAKSGTKAFMEALQAGADIS 117          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HSP90_THEAN (Heat shock protein 90 OS=Theileria annulata GN=TA12105 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.006e-39
Identity = 82/122 (67.21%), Postives = 102/122 (83.61%), Query Frame = 3
Query:  117 MASETET-----FAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            MAS+ ET     +AF A+I+QLLSLIIN FYSNKEIFLRELISN+SDAL+KIR+E++ D  +++ QP+ +I +  DK NNTL+I DSGIGMTKADLVNNLGTIA+SGT+ FMEAL AG+D+S
Sbjct:    1 MASKEETPDQEVYAFNADISQLLSLIINAFYSNKEIFLRELISNASDALEKIRYEAIKDPKQIEDQPDYYIRLYADKNNNTLTIEDSGIGMTKADLVNNLGTIAKSGTRAFMEALQAGSDMS 122          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: HSP90_THEPA (Heat shock protein 90 OS=Theileria parva GN=TP02_0244 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 3.926e-39
Identity = 78/114 (68.42%), Postives = 98/114 (85.96%), Query Frame = 3
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            + E +AF A+I+QLLSLIIN FYSNKEIFLRELISN+SDAL+KIR+E++ D  +++ QP+ +I +  DK NNTL+I DSGIGMTKADLVNNLGTIA+SGT+ FMEAL AG+D+S
Sbjct:    9 DQEVYAFNADISQLLSLIINAFYSNKEIFLRELISNASDALEKIRYEAIKDPKQIEDQPDYYIRLYADKNNNTLTIEDSGIGMTKADLVNNLGTIAKSGTRAFMEALQAGSDMS 122          
BLAST of FC920365 vs. ExPASy Swiss-Prot
Match: H90B3_HUMAN (Putative heat shock protein HSP 90-beta-3 OS=Homo sapiens GN=HSP90AB3P PE=5 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 5.669e-38
Identity = 81/109 (74.31%), Postives = 94/109 (86.24%), Query Frame = 3
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 452
            E ETFAFQAEI QL+SLIINTFYSN+EIFL+ELISN+SDALDKIR+ESLTD SKLD+  EL I IIP+    TL+++D+GIGMTKADL+NNL TIA+SGTK  MEAL A
Sbjct:   11 EVETFAFQAEIAQLISLIINTFYSNEEIFLQELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLALVDTGIGMTKADLINNLRTIAKSGTKACMEALQA 119          
The following BLAST results are available for this feature:
BLAST of FC920365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HSP90_SCHPO2.459e-4173.04Heat shock protein 90 homolog OS=Schizosaccharomyc... [more]
HSP90_CANAL2.459e-4173.91Heat shock protein 90 homolog OS=Candida albicans ... [more]
HSC90_DICDI5.478e-4174.14Heat shock cognate 90 kDa protein OS=Dictyostelium... [more]
HSP82_YEAST7.911e-4072.57ATP-dependent molecular chaperone HSP82 OS=Sacchar... [more]
HSP82_ASHGO1.762e-3971.30Heat shock protein HSP82 OS=Ashbya gossypii GN=HSP... [more]
HSC82_YEAST1.762e-3972.32ATP-dependent molecular chaperone HSC82 OS=Sacchar... [more]
HSP83_DROPB2.302e-3972.65Heat shock protein 83 (Fragment) OS=Drosophila pse... [more]
HSP90_THEAN3.006e-3967.21Heat shock protein 90 OS=Theileria annulata GN=TA1... [more]
HSP90_THEPA3.926e-3968.42Heat shock protein 90 OS=Theileria parva GN=TP02_0... [more]
H90B3_HUMAN5.669e-3874.31Putative heat shock protein HSP 90-beta-3 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionC32007D04EF RVDevelop1 Citrus clementina cDNA clone C32007D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920365 ID=FC920365; Name=FC920365; organism=Citrus clementina; type=EST; length=467bp
GACACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTTC
GCTTCCAAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGA
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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