FC920366

Overview
NameFC920366
Unique NameFC920366
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14126 contig Ccv1_Contig14126:1..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.067e-63
Identity = 117/239 (48.95%), Postives = 155/239 (64.85%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAFEF 717
            EA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAASGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +EF
Sbjct:  128 EACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEF 365          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.067e-63
Identity = 117/239 (48.95%), Postives = 155/239 (64.85%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAFEF 717
            EA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAASGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +EF
Sbjct:  128 EACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEF 365          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.067e-63
Identity = 117/239 (48.95%), Postives = 155/239 (64.85%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAFEF 717
            EA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAASGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +EF
Sbjct:  128 EACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEF 365          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 7.854e-63
Identity = 116/239 (48.54%), Postives = 155/239 (64.85%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAFEF 717
            EA ML G+A K +W+++ +  GKP +KPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAASGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL   G GWV+WR ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +EF
Sbjct:  128 EACMLGGMAMKWRWRKRMEAAGKPTNKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEF 365          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.527e-61
Identity = 117/240 (48.75%), Postives = 155/240 (64.58%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAFE 714
            EA ML G+A K  W+++ ++ G   +  KPN+V  +  QVCWEKF  Y+            +  +N  K ++ VDE TI V  I+G T TG ++D+K L +L+ + N++T +   IHVDAASGG  APF+ P+LEWDFRL  V SIN SGHKYGLVY GVGWV+WR K  LP+EL+F ++YLG + PT  +NFS  +SQ+I QYY F+R GF+GYK I E     A  L E +EK G FE
Sbjct:  126 EACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCVYWDIEMREVPMDREHMSINLEKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLIEEYNKQTDYKVYIHVDAASGGLYAPFVEPELEWDFRLKNVISINTSGHKYGLVYPGVGWVLWRDKKYLPEELIFKVSYLGGELPTMAINFSHSASQLIGQYYNFVRYGFDGYKAIHERTHKVAMYLAEEIEKTGMFE 365          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.601e-61
Identity = 116/240 (48.33%), Postives = 155/240 (64.58%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAFE 714
            EA ML G+A K  W+++ ++ G   +  KPN+V  +  QVCWEKF  Y+            +  +N  K ++ VDE TI V  I+G T TG ++D+K L +L+ + N++T +   IHVDAASGG  APF+ P+LEWDFRL  V SIN SGHKYGLVY GVGWV+WR K  LP+EL+F ++YLG + PT  +NFS  +SQ+I QYY F+R GF+GYK I E     A  L + +EK G FE
Sbjct:  126 EACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCIYWDIEMREVPMDKEHMSINLDKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLIEEYNKQTDYKVYIHVDAASGGLYAPFVEPELEWDFRLKNVISINTSGHKYGLVYPGVGWVLWRDKKYLPEELIFKVSYLGGELPTMAINFSHSASQLIGQYYNFVRYGFDGYKAIHERTHKVAMFLAKEIEKTGMFE 365          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.460e-58
Identity = 110/240 (45.83%), Postives = 147/240 (61.25%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAFE 714
            EA ML GLA K +W+   +++G      +PN++  +  QVCWEKF  Y+            +  ++  K  +LVDE TI V  ILG T TG+F+D++LL + +   NE       IH+D ASG    PF+ P+L WDFRL  V SIN SGHKYGLVY GVGW++W+ K+ LP EL+F ++YLG   PT  +NFS+ +SQII QYY F+R GFEGY+ I E     A  L + +EK G FE
Sbjct:  127 EACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKNHLSLDVDKVFDLVDEYTIGVVGILGITYTGKFDDIQLLDEKVEAYNETNEHQLVIHIDGASGAMFTPFVNPELPWDFRLKNVVSINTSGHKYGLVYPGVGWILWKDKEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTAIYLAKTVEKSGYFE 366          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.460e-58
Identity = 110/240 (45.83%), Postives = 146/240 (60.83%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAFE 714
            EA ML GLA K +W+   +++G      +PN++  +  QVCWEKF  Y+            +  ++  K  ELVDE TI +  ILG T TG+F+D+ LL + +   NE       IH+D ASG    PF+ P+L WDFRL  V SIN SGHKYGLVY GVGW++W+ K+ LP EL+F ++YLG   PT  +NFS+ +SQII QYY F+R GFEGY+ I E     A  L + +EK G FE
Sbjct:  127 EACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKEHLSLDVEKVFELVDEYTIGIVGILGITYTGKFDDIALLDEKVEAYNEANEHQLVIHIDGASGAMFTPFVNPELPWDFRLKNVVSINTSGHKYGLVYPGVGWILWKDKEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTALYLSKTVEKSGYFE 366          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 7.607e-58
Identity = 108/240 (45.00%), Postives = 151/240 (62.92%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAFE 714
            EA ML G+A K  W+++ ++ G      KPN+V  +  QVCWEKF  Y+            +  +N  + ++ VDE TI V  ILG T TG ++D+  L++ L + N +T +   IHVDAASGGF  PF+ PD+ WDFRL  V SIN SGHKYGLVY G+GWV+W+ +  LP+EL+F ++YLG + PT  +NFS+ +S II QYY F+R GFEGY+ I +     A+ L   +E+ G F+
Sbjct:  124 EACMLGGMAMKFAWRKRAEKLGLDIYAQKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKDHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKLEEYNSKTDYKVYIHVDAASGGFFTPFVEPDIIWDFRLKNVISINTSGHKYGLVYPGIGWVLWKDESYLPEELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFD 363          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.298e-57
Identity = 108/240 (45.00%), Postives = 151/240 (62.92%), Query Frame = 1
Query:    1 EAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQGAFE 714
            EA ML G+A K  W+++ ++ G      KPN+V  +  QVCWEKF  Y+            +  +N  + ++ VDE TI V  ILG T TG ++D+  L++ L + N +T +   IHVDAASGGF  PF+ PD+ WDFRL  V SIN SGHKYGLVY G+GWV+W+ +  LP+EL+F ++YLG + PT  +NFS+ +S II QYY F+R GFEGY+ I +     A+ L   +E+ G F+
Sbjct:  124 EACMLGGMAMKFAWRKRAEKLGLDIYAKKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKEHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKLEEYNSKTDYKVYIHVDAASGGFFTPFVEPDIIWDFRLKNVISINTSGHKYGLVYPGIGWVLWKDESYLPEELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFD 363          
The following BLAST results are available for this feature:
BLAST of FC920366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
DCEA_ECOLI2.067e-6348.95Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECOL62.067e-6348.95Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECO572.067e-6348.95Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEB_ECOL67.854e-6348.54Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCE_LACLM2.527e-6148.75Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA9.601e-6148.33Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEC_LISMO4.460e-5845.83Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEC_LISIN4.460e-5845.83Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEB_LISIN7.607e-5845.00Glutamate decarboxylase beta OS=Listeria innocua G... [more]
DCEB_LISMO1.298e-5745.00Glutamate decarboxylase beta OS=Listeria monocytog... [more]

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Properties
Property NameValue
Genbank descriptionC32007D05EF RVDevelop1 Citrus clementina cDNA clone C32007D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920366 ID=FC920366; Name=FC920366; organism=Citrus clementina; type=EST; length=734bp
GAGGCAATAATGCTTGCTGGCTTGGCTTTTAAAAGGAAGTGGCAGCAGAA
GAGAAAAGAGCAAGGCAAACCCTATGATAAGCCCAATATAGTCACTGGAG
CTAATGTGCAGGTATGCTGGGAGAAATTTGCGAGGTACTTTGAGGTTGAG
CTGAAGGAGGTGAAACTGGAAGAGGGATATTATGTGATGAATCCTGTGAA
AGCTGTTGAGTTGGTAGATGAGAACACCATTTGTGTTGCAGCCATTCTGG
GATCAACCTTGACGGGAGAATTTGAGGATGTTAAGCTTCTTCATGACCTC
CTCACCAAAAAGAATGAGGAGACCGGTTGGGACACCCCCATTCATGTTGA
TGCTGCTAGCGGCGGATTTATTGCTCCTTTTCTCTATCCAGACCTTGAAT
GGGATTTCCGTTTGCCACTGGTGAAGAGCATTAATGTCAGTGGTCACAAG
TACGGCCTTGTATATGCAGGTGTTGGCTGGGTTGTCTGGAGGACCAAAGA
TGACTTGCCGGATGAACTTGTCTTTCACATCAACTACCTTGGATCTGATC
AACCGACTTTCACCCTCAACTTCTCAAAAGGCTCCAGTCAAATAATTGCT
CAATATTATCAGTTTATACGGCTTGGCTTTGAGGGTTACAAGAACATTAT
GGAAAATTGCATGGGGAATGCTAGAGCGCTAAGAGAAGGATTAGAGAAAC
AGGGCGCTTTTGAATTCTCTCCCAGATGTGGCGT
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