FC920366

Overview
NameFC920366
Unique NameFC920366
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14126 contig Ccv1_Contig14126:1..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_THEGJ (L-tyrosine decarboxylase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=mfnA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.964e-15
Identity = 52/165 (31.52%), Postives = 79/165 (47.88%), Query Frame = 1
Query:  181 YVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCM 663
            Y +N     E + +NTI +  I G+T  G  +D+  L DL         +  P+HVDAA GGF+ PF     Y   ++DFRL  VKSI +  HK G+V    G +++R +  +    +      G      T+  ++  +  +A +     LGFEGYK I+   M
Sbjct:  144 YTVNVRDVEEKITDNTIGIVGIAGTTGLGVVDDIPALSDLALD------YGLPLHVDAAFGGFVIPFAKALGYDIPDFDFRLKGVKSITIDPHKMGMVPIPAGGIIFRERKYIDAISILAPYLAGGRIWQATITGTRPGANALAVWAMIKHLGFEGYKEIVRKAM 302          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_PYRHO (L-tyrosine decarboxylase OS=Pyrococcus horikoshii GN=mfnA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.964e-15
Identity = 54/166 (32.53%), Postives = 81/166 (48.80%), Query Frame = 1
Query:  214 VDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK 699
            + +NTI +  I G+T  G  +D+  L DL         +  P+HVDAA GGF+ PF     Y   ++DF+L  V+SI +  HK G+     G +V+R K  L    V      G      T+  ++  + +IA +     LGFEGY  I+E  M  +R   E ++K
Sbjct:  156 ISDNTIGIVGIAGTTGLGVVDDIPALSDLARD------YGIPLHVDAAFGGFVIPFAKELGYELPDFDFKLKGVQSITIDPHKMGMAPIPAGGIVFRRKKYLKAISVLAPYLAGGKVWQATITGTRPGASVIAVWALIKHLGFEGYMRIVERAMKLSRWFAEEIKK 315          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_PYRAB (L-tyrosine decarboxylase OS=Pyrococcus abyssi GN=mfnA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.964e-15
Identity = 55/173 (31.79%), Postives = 86/173 (49.71%), Query Frame = 1
Query:  196 VKAVEL-VDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK 699
            VK VE  + +NTI +  I G+T  G  +D+  L DL  +      +  P+HVDAA GGF+ PF     Y   ++DF+L  V+SI +  HK G+     G +++R K  L    V      G      T+  ++  + ++A +     LGFEGY+ I+   M  +R   E ++K
Sbjct:  150 VKDVEAKISDNTIGIVGIAGTTGLGVVDDIPALSDLARE------YGIPLHVDAAFGGFVIPFAKSLGYDLPDFDFKLKGVESITIDPHKMGMAPIPAGGIIFRRKKYLKAISVLAPYLAGGKVWQATITGTRPGASVLAVWALIKHLGFEGYREIVRKAMELSRWFAEEIKK 316          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_PYRFU (L-tyrosine decarboxylase OS=Pyrococcus furiosus GN=mfnA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.358e-14
Identity = 57/173 (32.95%), Postives = 85/173 (49.13%), Query Frame = 1
Query:  196 VKAVEL-VDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK 699
            VK VE  + ENTI +  I G+T  G  +D+  L DL         +  P+HVDAA GGF+ PF     Y   ++DF+L  V+SI +  HK G+     G +V+R K  L    V      G      T+  ++  + ++A +     LGFEGY  I++  M  +R   E ++K
Sbjct:  149 VKDVEAKISENTIGIVGIAGTTGLGVVDDIPALSDLARD------YGIPLHVDAAFGGFVIPFAKELGYDLPDFDFKLKGVQSITIDPHKMGMAPIPAGGIVFRHKKYLRAISVLAPYLAGGKIWQATITGTRPGASVLAVWALIKHLGFEGYMEIVDRAMKLSRWFAEEIKK 315          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_METBU (L-tyrosine decarboxylase OS=Methanococcoides burtonii (strain DSM 6242) GN=mfnA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.774e-14
Identity = 50/165 (30.30%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  211 LVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQG 705
            L+D+NTI +  I G+T  G+ + +  L  +  +K         +H+DAA GGF+ PF+  D  +DFRL  V S+ +  HK  L     G ++++ + +  + L  H  YL S    ++L  ++  + + + Y     LG +GYK ++ +CM   + L +G EK G
Sbjct:  155 LIDKNTIGLVGIAGTTEFGQLDPINELSKIAIEKG------IFLHIDAAFGGFVIPFMDIDYTYDFRLEGVTSMTIDPHKMALSTIPSGGLLFK-EPEYFECLEIHTPYL-SVNKQYSLTGTRSGAGVASTYAVMKHLGRKGYKKVVSDCMSVTKKLVDGAEKLG 311          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_METTH (L-tyrosine decarboxylase OS=Methanobacterium thermoautotrophicum GN=mfnA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 64/211 (30.33%), Postives = 96/211 (45.50%), Query Frame = 1
Query:   76 DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAV-ELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD----LEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGL 693
            +KP I+   +    + K A               Y V   V++V +L+ ENT+ V  + G+T  G  + V+ L ++   +      D  +H+DAA GGFI PFL        E+DF+L  V SI V  HK GL     G +++R    L D +     YL   Q +  +    G+S   A +     +G EGY+ +    MG  R LR+GL
Sbjct:   87 EKPEIIVPKSAHFSFRKAADILGLRLREAELDQDYRV--DVESVRKLISENTVAVVGVAGTTELGRIDPVEELSEICLDE------DIHLHIDAAFGGFIIPFLRETGAELPEFDFKLQGVSSITVDPHKMGLAPIPSGCILFRDASYL-DAMSIETPYLTEKQQSTIVGTRTGAS-AAATWAIMKHMGREGYRKLALRVMGVTRRLRDGL 287          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_METMA (L-tyrosine decarboxylase OS=Methanosarcina mazei GN=mfnA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.742e-14
Identity = 60/208 (28.85%), Postives = 97/208 (46.63%), Query Frame = 1
Query:   82 PNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQG 705
            PNIV  A+    ++K A               + V +     +L++ENTI +  I G+T  G+ + +  L ++  +       +  +HVDAA GGF+ PFL     +DF++P V SI +  HK GL     G +++R+   L D L     YL + +  FTL  ++  +   A       LG+EGY+  ++ CM     + E   K G
Sbjct:  127 PNIVIPASAHFSFDKVADMMGIEVRRASLDSEFRV-DMASVEKLINENTIGLVGIAGNTEFGQIDPIDKLSEVALEN------ELFLHVDAAFGGFVIPFLEKPQPFDFKVPGVTSIAIDPHKMGLSTIPSGALLFRSPSFL-DSLKVSTPYL-TTKSQFTLTGTRSGASAAATCAVMKYLGYEGYRKNVQYCMELTSKIVEEARKLG 325          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_METS3 (L-tyrosine decarboxylase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=mfnA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.805e-14
Identity = 56/176 (31.82%), Postives = 82/176 (46.59%), Query Frame = 1
Query:  208 ELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNF------SKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQG 705
            E + +NT+ + AI G+T  G  + ++ L ++  + N         HVDAA GGF  PFL    Y    +DF LP V SI V  HK GL     G +++R K+        ++  +  D P  T+        ++  +   A Y     LG EGY+ +  N M N    +EGLEK G
Sbjct:  156 ENISDNTVAIVAIAGTTELGLVDPIEELSEIAYENN------IYFHVDAAFGGFSIPFLRKIGYEFPPFDFSLPGVCSITVDPHKMGLAPIPAGGILFRKKE--------YLEVMAVDSPYLTVKTQSTIVGTRSGAASAATYAIMKYLGNEGYEKLAGNLMDNTHYFKEGLEKIG 317          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_METMJ (L-tyrosine decarboxylase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=mfnA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13
Identity = 59/220 (26.82%), Postives = 97/220 (44.09%), Query Frame = 1
Query:   67 KPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVE-LVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTF------TLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQG 705
            K    PN+V  A+    + K                G+ +    +AV+ L+D NT+ +  ++G+T  G  + +  L ++   +N        +HVDAA GG + PFL   + +DF LP V SI+V  HK G+     G ++ R+ +          + L  D P        TL  ++  + + A       LG +G + ++  CM N R L EG+E  G
Sbjct:  104 KSAKSPNVVVPASSHFSFTKACDILGLEMRTVPLDAGFRM--ETEAVDGLIDHNTVALVGVVGTTEYGMVDPISRLSEIALDRN------VFLHVDAAFGGMVVPFLDRPVPFDFSLPGVSSISVDPHKMGMSTIPAGCLLTRSAE--------WFSCLNVDTPYLTVKRECTLAGTRPGASVAAAIAVLEYLGMDGMRAVVAGCMENCRRLIEGMETLG 307          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_METBF (L-tyrosine decarboxylase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=mfnA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.370e-13
Identity = 51/154 (33.12%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  202 AVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCM 663
            A  L+D NTI +  I G+T  G+ + ++ L  L  +       +  +HVDAA GGF+ PFL     +DF++P V SI +  HK GL     G +++R+   + D L  +  YL + +  FTL  ++  +   A Y     LG EGY+  ++ CM
Sbjct:  166 AESLIDANTIGLVGIAGNTEFGQVDPIEELSKLALEN------ELFLHVDAAFGGFVIPFLEKPYSFDFKVPGVTSIAIDPHKMGLSTIPSGALLFRSPFFM-DSLKVNTPYL-TTKSQFTLTGTRSGASAAATYAVMKYLGREGYRKNVQYCM 311          
The following BLAST results are available for this feature:
BLAST of FC920366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
MFNA_THEGJ7.964e-1531.52L-tyrosine decarboxylase OS=Thermococcus gammatole... [more]
MFNA_PYRHO7.964e-1532.53L-tyrosine decarboxylase OS=Pyrococcus horikoshii ... [more]
MFNA_PYRAB7.964e-1531.79L-tyrosine decarboxylase OS=Pyrococcus abyssi GN=m... [more]
MFNA_PYRFU1.358e-1432.95L-tyrosine decarboxylase OS=Pyrococcus furiosus GN... [more]
MFNA_METBU1.774e-1430.30L-tyrosine decarboxylase OS=Methanococcoides burto... [more]
MFNA_METTH5.162e-1430.33L-tyrosine decarboxylase OS=Methanobacterium therm... [more]
MFNA_METMA6.742e-1428.85L-tyrosine decarboxylase OS=Methanosarcina mazei G... [more]
MFNA_METS38.805e-1431.82L-tyrosine decarboxylase OS=Methanobrevibacter smi... [more]
MFNA_METMJ2.562e-1326.82L-tyrosine decarboxylase OS=Methanoculleus marisni... [more]
MFNA_METBF4.370e-1333.12L-tyrosine decarboxylase OS=Methanosarcina barkeri... [more]

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Properties
Property NameValue
Genbank descriptionC32007D05EF RVDevelop1 Citrus clementina cDNA clone C32007D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920366 ID=FC920366; Name=FC920366; organism=Citrus clementina; type=EST; length=734bp
GAGGCAATAATGCTTGCTGGCTTGGCTTTTAAAAGGAAGTGGCAGCAGAA
GAGAAAAGAGCAAGGCAAACCCTATGATAAGCCCAATATAGTCACTGGAG
CTAATGTGCAGGTATGCTGGGAGAAATTTGCGAGGTACTTTGAGGTTGAG
CTGAAGGAGGTGAAACTGGAAGAGGGATATTATGTGATGAATCCTGTGAA
AGCTGTTGAGTTGGTAGATGAGAACACCATTTGTGTTGCAGCCATTCTGG
GATCAACCTTGACGGGAGAATTTGAGGATGTTAAGCTTCTTCATGACCTC
CTCACCAAAAAGAATGAGGAGACCGGTTGGGACACCCCCATTCATGTTGA
TGCTGCTAGCGGCGGATTTATTGCTCCTTTTCTCTATCCAGACCTTGAAT
GGGATTTCCGTTTGCCACTGGTGAAGAGCATTAATGTCAGTGGTCACAAG
TACGGCCTTGTATATGCAGGTGTTGGCTGGGTTGTCTGGAGGACCAAAGA
TGACTTGCCGGATGAACTTGTCTTTCACATCAACTACCTTGGATCTGATC
AACCGACTTTCACCCTCAACTTCTCAAAAGGCTCCAGTCAAATAATTGCT
CAATATTATCAGTTTATACGGCTTGGCTTTGAGGGTTACAAGAACATTAT
GGAAAATTGCATGGGGAATGCTAGAGCGCTAAGAGAAGGATTAGAGAAAC
AGGGCGCTTTTGAATTCTCTCCCAGATGTGGCGT
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