FC920366

Overview
NameFC920366
Unique NameFC920366
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14126 contig Ccv1_Contig14126:1..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_METAC (L-tyrosine decarboxylase OS=Methanosarcina acetivorans GN=mfnA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.661e-12
Identity = 50/151 (33.11%), Postives = 78/151 (51.66%), Query Frame = 1
Query:  211 LVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCM 663
            L+D NTI +  I G+T  G+ + +  L ++  +       +  +H+DAA GGF+ PFL     +DF+LP V SI V  HK GL     G +++R+   L D L  +  YL + +  FTL  ++  +   A       LG EGY+  ++ CM
Sbjct:  169 LIDANTIGLIGIAGNTEFGQIDPIDKLSEIALEN------ELFLHIDAAFGGFVIPFLEKPQPFDFKLPGVTSIAVDPHKMGLSTIPSGALLFRSASFL-DSLKVNTPYL-TTKAQFTLTGTRSGASAAATCAVMKYLGNEGYRKNVQYCM 311          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_HALMA (L-tyrosine decarboxylase OS=Haloarcula marismortui GN=mfnA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 62/210 (29.52%), Postives = 88/210 (41.90%), Query Frame = 1
Query:   76 DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKQG 705
            D PN+V   +    + K A                Y +N     ELVDE+T+CV  + GST  G  + +  + DL      ET  D   HVDAA GGF  PF   D +W F    + ++ +  HK G      G ++ R +  L DEL     YL S     TL  ++  + + +       L   GY+   E  M NA  L + L  +G
Sbjct:   92 DDPNVVAPVHAHFSFTKAADVLGVELRTAPAAD--YRVNMAAMAELVDEDTVCVVGVAGSTEYGYVDPIPAIADL-----AET-VDALCHVDAAWGGFYLPF--TDHDWHFGHADIDTMTIDPHKVGQAAVPAGGLLARDR-TLLDELAVETPYLESTD-QLTLTGTRSGAGVASAVAAMESLWPAGYRQQYETSMANADWLADQLSARG 289          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: MFNA_METST (L-tyrosine decarboxylase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=mfnA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 51/162 (31.48%), Postives = 78/162 (48.15%), Query Frame = 1
Query:  181 YVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIME 654
            Y ++  K  +L+ +NT+ +  I G+T  G  +D+  +  +         +   +HVDAA GGFI PFL       L +DF+   V SI +  HK GL     G +++R K  L ++L     YL  D+ T  +    G+S   A +      G EGYK I+E
Sbjct:  146 YKIDVTKLPDLITDNTMAMVGIAGTTELGLVDDIPEISKIAKS------YGVYLHVDAALGGFIIPFLNYKNNNQLNFDFKCKGVSSITIDPHKMGLAPVPSGGIIFRKKKYL-EKLSIKTPYLTKDKQTTIVGTRTGAS-TAATWTLLNYHGMEGYKKIVE 299          
BLAST of FC920366 vs. ExPASy Swiss-Prot
Match: SGPL_DROME (Sphingosine-1-phosphate lyase OS=Drosophila melanogaster GN=Sply PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 53/222 (23.87%), Postives = 92/222 (41.44%), Query Frame = 1
Query:   67 KPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGL-EKQGAFEF 717
            K   +PNIV    V   ++K  +YF             Y ++  K    ++ NTI +     +   G  +D++ +  L  K      +D P+HVDA  G F+   +    Y    +DF +  V SI+   HKYG    G   +++  K     +     ++ G    + T+N S+    I A +   +  G++GY    +  +  AR +  G+ +  G F F
Sbjct:  217 KGITRPNIVVPKTVHAAFDKGGQYFNIHVRSVDVDPETYEVDIKKFKRAINRNTILLVGSAPNFPYGTIDDIEAIAALGVK------YDIPVHVDACLGSFVVALVRNAGYKLRPFDFEVKGVTSISADTHKYGFAPKGSSVILYSDKKYKDHQFTVTTDWPGGVYGSPTVNGSRAGGIIAACWATMMSFGYDGYLEATKRIVDTARYIERGVRDIDGIFIF 432          
The following BLAST results are available for this feature:
BLAST of FC920366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
MFNA_METAC1.661e-1233.11L-tyrosine decarboxylase OS=Methanosarcina acetivo... [more]
MFNA_HALMA8.241e-1229.52L-tyrosine decarboxylase OS=Haloarcula marismortui... [more]
MFNA_METST1.836e-1131.48L-tyrosine decarboxylase OS=Methanosphaera stadtma... [more]
SGPL_DROME3.132e-1123.87Sphingosine-1-phosphate lyase OS=Drosophila melano... [more]

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Properties
Property NameValue
Genbank descriptionC32007D05EF RVDevelop1 Citrus clementina cDNA clone C32007D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920366 ID=FC920366; Name=FC920366; organism=Citrus clementina; type=EST; length=734bp
GAGGCAATAATGCTTGCTGGCTTGGCTTTTAAAAGGAAGTGGCAGCAGAA
GAGAAAAGAGCAAGGCAAACCCTATGATAAGCCCAATATAGTCACTGGAG
CTAATGTGCAGGTATGCTGGGAGAAATTTGCGAGGTACTTTGAGGTTGAG
CTGAAGGAGGTGAAACTGGAAGAGGGATATTATGTGATGAATCCTGTGAA
AGCTGTTGAGTTGGTAGATGAGAACACCATTTGTGTTGCAGCCATTCTGG
GATCAACCTTGACGGGAGAATTTGAGGATGTTAAGCTTCTTCATGACCTC
CTCACCAAAAAGAATGAGGAGACCGGTTGGGACACCCCCATTCATGTTGA
TGCTGCTAGCGGCGGATTTATTGCTCCTTTTCTCTATCCAGACCTTGAAT
GGGATTTCCGTTTGCCACTGGTGAAGAGCATTAATGTCAGTGGTCACAAG
TACGGCCTTGTATATGCAGGTGTTGGCTGGGTTGTCTGGAGGACCAAAGA
TGACTTGCCGGATGAACTTGTCTTTCACATCAACTACCTTGGATCTGATC
AACCGACTTTCACCCTCAACTTCTCAAAAGGCTCCAGTCAAATAATTGCT
CAATATTATCAGTTTATACGGCTTGGCTTTGAGGGTTACAAGAACATTAT
GGAAAATTGCATGGGGAATGCTAGAGCGCTAAGAGAAGGATTAGAGAAAC
AGGGCGCTTTTGAATTCTCTCCCAGATGTGGCGT
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