FC920378

Overview
NameFC920378
Unique NameFC920378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.175e-18
Identity = 49/98 (50.00%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINV-VDDSTLEINGK---LIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGRL                NDPFI+  YM YMF YDSTHG F G I+    +  +E  GK    IKVF+ +DPAEI W + G +YV+E
Sbjct:    5 KVGINGFGRIGRLALRAAVEKDTVQVVAINDPFIELDYMVYMFNYDSTHGRFNGKISTSAGNLVVEKEGKATHTIKVFNLKDPAEIKWAEVGAEYVIE 102          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 44/93 (47.31%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  377 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            V +NGFGRIGRL                NDPFI   Y AYMFKYDSTHG F G ++  D   + +NGK + VF+++DPA +PWG  GVD  ++
Sbjct:    4 VSVNGFGRIGRLVTRIAISRKDINLVAINDPFISTDYAAYMFKYDSTHGRFDGEVS-HDKDHIILNGKKVAVFNEKDPAALPWGKLGVDVAID 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_MESAU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Mesocricetus auratus GN=GAPDH PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 45/86 (52.33%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  398 RIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            RIGRL                NDPFID  YM YMF+YDSTHG FKGT+   ++  L INGK I +F +RDP  I WGD G +YVVE
Sbjct:    1 RIGRLVTRAAFTSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFKGTVK-AENGKLVINGKAITIFQERDPTNIKWGDAGAEYVVE 85          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 47/95 (49.47%), Postives = 55/95 (57.89%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVF-KGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            K+GINGFGRIGRL                NDPFI  +YM YMFKYDS HG + K  + V D  TL    K + VF  R+P E PWG+ G +YVVE
Sbjct:    4 KIGINGFGRIGRLVARVALMSDDIELVAVNDPFITTEYMTYMFKYDSVHGQWKKDELKVKDSKTLLFGDKPLTVFGVRNPEEDPWGEAGAEYVVE 98          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 47/95 (49.47%), Postives = 55/95 (57.89%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFK-GTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            K+GINGFGRIGRL                NDPFI   YM YMFKYDS HG +K   + V D  TL    K + VF  R+P EIPWG+ G ++VVE
Sbjct:    7 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDSKTLLFGEKPVTVFGVRNPEEIPWGETGAEFVVE 101          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 49/94 (52.13%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+  V D  L +NGK I+V ++RDPA + W + GVD V E
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAE 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 49/94 (52.13%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+  V D  L +NGK I+V ++RDPA + W + GVD V E
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAE 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 49/94 (52.13%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+  V D  L +NGK I+V ++RDPA + W + GVD V E
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAE 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 49/94 (52.13%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+  V D  L +NGK I+V ++RDPA + W + GVD V E
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAE 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 49/94 (52.13%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+  V D  L +NGK I+V ++RDPA + W + GVD V E
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAE 95          
The following BLAST results are available for this feature:
BLAST of FC920378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
G3P1_GLORO2.175e-1850.00Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]
G3P_ZYGRO2.840e-1847.31Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P_MESAU2.840e-1852.33Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PC_PETCR2.840e-1849.47Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAGLI2.840e-1849.47Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_SHIFL2.840e-1852.13Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_ESCF32.840e-1852.13Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOLI2.840e-1852.13Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL62.840e-1852.13Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO572.840e-1852.13Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC32007E11EF RVDevelop1 Citrus clementina cDNA clone C32007E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920378 ID=FC920378; Name=FC920378; organism=Citrus clementina; type=EST; length=657bp
GGAGCCTACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCT
CGTTAGGGTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAA
CAAATGGCCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGT
CCGCGCCGACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGA
CTGCTGCTTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCA
GTTCCAAGTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAG
TATTCAACCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAA
AATCACGGAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGG
ATTGGAAGGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGT
TGTGGCGGTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGT
TTAAGTATGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTG
GATGACTCCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAA
AAGGGACCCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTG
TTGAATC
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