FC920378

Overview
NameFC920378
Unique NameFC920378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 4.845e-18
Identity = 48/94 (51.06%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                ND  +DA+YMAY  KYDSTHG F GT+ V+    L +NGK I+V S+RDPA + W + GV+ VVE
Sbjct:    3 KVGINGFGRIGRVVFRAAQMRPDIEIVGIND-LLDAEYMAYSLKYDSTHGRFDGTVEVI-KGALVVNGKSIRVTSERDPANLKWDEIGVEVVVE 94          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PC_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Scenedesmus vacuolatus GN=GapC PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.328e-18
Identity = 44/90 (48.89%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  386 NGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            NGFGRIG L                NDPFI+ +YMAYMFKYDS HG ++G +   D   + ING+ IK  +  DP +IPWG+ G DYVVE
Sbjct:    1 NGFGRIGSLVLRATLDRKDVKVVAINDPFIEGEYMAYMFKYDSVHGRYEGDVQ-GDKHGITINGEQIKTLAMMDPTQIPWGEVGADYVVE 89          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.328e-18
Identity = 48/95 (50.53%), Postives = 53/95 (55.79%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGRL                NDPFI   YM YMFKYDS HG  K   I + D+ TL      + VF  R+P EIPWG  G D+VVE
Sbjct:    5 KVGINGFGRIGRLVARVILQRDDCELVAVNDPFISTDYMTYMFKYDSVHGQCKSHEIKLKDEKTLLFGETPVAVFGCRNPEEIPWGQAGADFVVE 99          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P3_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhizomucor racemosus GN=GPD3 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.328e-18
Identity = 46/92 (50.00%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  380 GINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            GINGF                      NDPFID +YM YMFKYDSTHG FKGT+    D  L +NG  I V ++RDPA+IPWG +G DYV+E
Sbjct:    7 GINGFRSHWPYCLACSLENPKVKVVAINDPFIDLEYMVYMFKYDSTHGRFKGTVE-HKDGKLVVNGHEIAVHAERDPAQIPWGSHGADYVIE 97          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.264e-18
Identity = 46/95 (48.42%), Postives = 54/95 (56.84%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            K+GINGFGRIGRL                NDPFI   YM YMFKYDS HG +K   + V D +TL    K + VF+ R+P EIPW   G D +VE
Sbjct:    6 KIGINGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELTVKDSNTLLFGQKPVTVFAHRNPEEIPWASTGADIIVE 100          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P4_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caenorhabditis elegans GN=gpd-4 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.264e-18
Identity = 49/97 (50.52%), Postives = 57/97 (58.76%), Query Frame = 2
Query:  377 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTL-EINGK---LIKVFSKRDPAEIPWGDYGVDYVVE 655
            VGINGFGRIGRL                NDPFI   YM Y+FKYDSTHG FKGT+    D  + + +GK    IKVF+ +DPA I WG    D+VVE
Sbjct:    6 VGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHGQFKGTVTYDGDFLIVQKDGKSSHKIKVFNSKDPAAIAWGSVKADFVVE 102          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.264e-18
Identity = 49/97 (50.52%), Postives = 57/97 (58.76%), Query Frame = 2
Query:  377 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTL-EINGK---LIKVFSKRDPAEIPWGDYGVDYVVE 655
            VGINGFGRIGRL                NDPFI   YM Y+FKYDSTHG FKGT+    D  + + +GK    IKVF+ +DPA I WG    D+VVE
Sbjct:    6 VGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHGQFKGTVTYDGDFLIVQKDGKSSHKIKVFNSKDPAAIAWGSVKADFVVE 102          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.410e-17
Identity = 46/100 (46.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:  359 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            S G  K+GINGFGRIGRL                NDPFI  + +  +FKYDS HG +K   + V D+ TL    K + VF  R+P EIPWG+ G +YVVE
Sbjct:    3 STGKIKIGINGFGRIGRLVARVALQRDDIELVAVNDPFISTESLTSLFKYDSVHGQWKKHEVKVKDEKTLLFGEKHVAVFGCRNPEEIPWGEVGAEYVVE 102          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.841e-17
Identity = 44/94 (46.81%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            ++ INGFGRIGRL                NDPFI   Y AYMFKYDSTHG F G ++  D  +L I+GK + VF +RDPA +PWG   +D  ++
Sbjct:    3 RIAINGFGRIGRLVLRIALSRKNIEVVAINDPFITVDYAAYMFKYDSTHGRFDGEVS-HDGKSLIIDGKKVLVFQERDPATLPWGAEKIDIAID 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.841e-17
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            K+GINGFGRIGRL                ND  + A  +AY+FKYDSTHG + GT+ V  +  + I+ + I  FS+R+PA++PWGD G DYVVE
Sbjct:    3 KIGINGFGRIGRLVARIAMANPQVTLVGIND-LVPASNLAYLFKYDSTHGSYGGTV-VAKEEGIVIDDQFIPCFSQRNPAQLPWGDLGADYVVE 94          
The following BLAST results are available for this feature:
BLAST of FC920378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
G3PC_LEIME4.845e-1851.06Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SCEVA6.328e-1848.89Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR6.328e-1850.53Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_RHIRA6.328e-1850.00Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhiz... [more]
G3PC_PEA8.264e-1848.42Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P4_CAEEL8.264e-1850.52Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caen... [more]
G3P1_CAEEL8.264e-1850.52Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]
G3PC_TAXBA1.410e-1746.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_KLUMA1.841e-1746.81Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P1_SYNY31.841e-1747.87Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]

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Properties
Property NameValue
Genbank descriptionC32007E11EF RVDevelop1 Citrus clementina cDNA clone C32007E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920378 ID=FC920378; Name=FC920378; organism=Citrus clementina; type=EST; length=657bp
GGAGCCTACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCT
CGTTAGGGTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAA
CAAATGGCCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGT
CCGCGCCGACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGA
CTGCTGCTTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCA
GTTCCAAGTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAG
TATTCAACCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAA
AATCACGGAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGG
ATTGGAAGGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGT
TGTGGCGGTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGT
TTAAGTATGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTG
GATGACTCCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAA
AAGGGACCCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTG
TTGAATC
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