FC920378

Overview
NameFC920378
Unique NameFC920378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 88.9669 bits (219), Expect = 2.405e-17
Identity = 44/85 (51.76%), Postives = 51/85 (60.00%), Query Frame = 2
Query:  401 IGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            IGRL                NDPFID  YM YMF+YDSTHG F GT+   ++  L INGK I +F +RDPA I WGD G +YVVE
Sbjct:    1 IGRLVTRAAFNTGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVK-AENGKLVINGKAITIFQERDPANIKWGDAGAEYVVE 84          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_ECHMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.405e-17
Identity = 44/94 (46.81%), Postives = 54/94 (57.45%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            +VGINGFGRIGRL                NDPFID +YM YMFKYDS HG +KG +  VD   L I+   I VF +   + +PW   G +Y+VE
Sbjct:    4 QVGINGFGRIGRLVLRAAVASNSVNVVAVNDPFIDLEYMVYMFKYDSAHGRYKGDVK-VDGGKLVIDSHRITVFQEMSASAVPWSQAGAEYIVE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.405e-17
Identity = 47/94 (50.00%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            +VGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F+G +  V    L +NGK I+V S+RDPA + W +  VD VVE
Sbjct:    4 RVGINGFGRIGRVVFRAAQRRNDIEIVGIND-LLDADYMAYMLKYDSTHGRFEGAVE-VQGGALVVNGKKIRVTSERDPANLKWNEINVDVVVE 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.405e-17
Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            ++ INGFGRIGRL                NDPFI   Y AYMFKYDSTHG F G ++  D   L I+GK + VF +RDPA +PWG   +D  ++
Sbjct:    3 RIAINGFGRIGRLVLRIALSRKNIEVVAINDPFITVDYAAYMFKYDSTHGRFDGEVS-HDGKALIIDGKKVLVFQERDPATLPWGAEKIDIAID 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P1_GIALA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giardia lamblia GN=GAP1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.405e-17
Identity = 45/94 (47.87%), Postives = 54/94 (57.45%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            ++GINGFGRIGR+                NDPF D +YM YM KYD+ HG F GTI   +DS + +NG  I VF    P EIPWG   VD V+E
Sbjct:    4 RLGINGFGRIGRMALRASLNIDGVQVVAINDPFTDCEYMEYMLKYDTVHGRFDGTIAHSEDS-ITVNGNKISVFKSMKPEEIPWGKTQVDIVLE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.140e-17
Identity = 43/94 (45.74%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            +V INGFGRIGRL                NDPFI   Y AYMFKYDSTHG + G ++  DD  + ++GK I  + +RDPA +PWG   VD  ++
Sbjct:    3 RVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVS-HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAID 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.140e-17
Identity = 43/94 (45.74%), Postives = 54/94 (57.45%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            ++ INGFGRIGRL                NDPFI   Y AYMFKYDSTHG + G +   DD  + I+GK I V  +RDPA +PWG   +D  ++
Sbjct:    3 RIAINGFGRIGRLVLRVALSRSNIEVVAVNDPFITTDYAAYMFKYDSTHGRYAGEV-THDDKHIIIDGKKIAVHQERDPANLPWGSENIDIAID 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PT_RAT (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Rattus norvegicus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.357e-17
Identity = 49/107 (45.79%), Postives = 58/107 (54.21%), Query Frame = 2
Query:  335 PPTIQKSRSDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            PP     +      VGINGFGRIGRL                NDPFID +YM YMFKYDSTHG +KGT+    +  L ++   I VF  ++P EIPW   G  YVVE
Sbjct:   88 PPPPPPPKPAKELTVGINGFGRIGRLVLRVCMEKGVRVVAV-NDPFIDPEYMVYMFKYDSTHGRYKGTVE-HKNGRLVVDNLEINVFQCKEPKEIPWSSVGNPYVVE 192          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.357e-17
Identity = 45/95 (47.37%), Postives = 54/95 (56.84%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFK-GTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            K+GINGFGRIGRL                NDPFI   YM YMFKYDS HG +K   + V D+ TL    K + VF +R+P EIP    G +Y+VE
Sbjct:    5 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGAWKHHELKVKDEKTLLFGEKPVVVFGRRNPEEIPRASTGAEYIVE 99          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 5.357e-17
Identity = 43/94 (45.74%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            ++ INGFGRIGRL                NDPFI   Y AYM KYDSTHG +KGT++  DD  + I+G  I  + +RDPA +PWG   +D  V+
Sbjct:    3 RIAINGFGRIGRLVLRLALQRKDIEVVAVNDPFISNDYAAYMVKYDSTHGRYKGTVS-HDDKHIIIDGVKIATYQERDPANLPWGSLKIDVAVD 95          
The following BLAST results are available for this feature:
BLAST of FC920378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
G3P_SHEEP2.405e-1751.76Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_ECHMU2.405e-1746.81Glyceraldehyde-3-phosphate dehydrogenase OS=Echino... [more]
G3PC_TRYBB2.405e-1750.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_KLUMA2.405e-1746.81Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P1_GIALA2.405e-1747.87Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giar... [more]
G3P3_YEAST3.140e-1745.74Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P2_CANGA3.140e-1745.74Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3PT_RAT5.357e-1745.79Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PC_ANTMA5.357e-1747.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_YEAST5.357e-1745.74Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionC32007E11EF RVDevelop1 Citrus clementina cDNA clone C32007E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920378 ID=FC920378; Name=FC920378; organism=Citrus clementina; type=EST; length=657bp
GGAGCCTACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCT
CGTTAGGGTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAA
CAAATGGCCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGT
CCGCGCCGACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGA
CTGCTGCTTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCA
GTTCCAAGTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAG
TATTCAACCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAA
AATCACGGAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGG
ATTGGAAGGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGT
TGTGGCGGTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGT
TTAAGTATGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTG
GATGACTCCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAA
AAGGGACCCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTG
TTGAATC
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