FC920378

Overview
NameFC920378
Unique NameFC920378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.459e-14
Identity = 43/94 (45.74%), Postives = 52/94 (55.32%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGRL                ND  +    +AY+ KYDSTHG  +  +   DD  + I+G  I   S R+PAE+PWG  G DYVVE
Sbjct:    5 KVGINGFGRIGRLVLRAGINNPNIEFVGIND-LVPPDNLAYLLKYDSTHGRLRSQVETKDDGIV-IDGHFIPCVSVRNPAELPWGKLGADYVVE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.905e-14
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            K+GINGFGRIGR                 ND   DA  +A++ KYDS HG     + VVD S L +NGK I++ ++RDPA++ WG  GV+ VVE
Sbjct:    4 KIGINGFGRIGRNVFRAALKNDNVEVVAIND-LTDANMLAHLLKYDSVHGKLDAEV-VVDGSNLVVNGKTIEISAERDPAQLSWGKQGVEIVVE 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.488e-14
Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            K+GINGFGRIGR+                ND  +D KY+AYM KYDSTHG FK  I  V ++ L INGK I++ S +DP ++ W    +D V+E
Sbjct:    4 KIGINGFGRIGRVLFRLAQERENIEVVAIND-LLDPKYIAYMLKYDSTHGNFKKDIE-VKNNNLIINGKKIRITSIKDPEKLMWDKLLIDVVIE 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.488e-14
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 2
Query:  290 AAKSIQPIRATATEIPPTIQKSRSDGNTKVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            AA+ I     T+T +     +  +    KV INGFGRIGR  L                ND     K  +++ KYDS  G FK  + +VD+ T+ ++GKLIKV S RDP ++PW + G+D V+E
Sbjct:   60 AAQIIPKAVTTSTPV-----RGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVLNDSG-GVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDIVIE 177          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.543e-14
Identity = 40/95 (42.11%), Postives = 55/95 (57.89%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXN-DPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                  +  +DA+Y+AYM KYDS HG F+G +  V+D  L +NG  I++ ++ DPA + W +   D VVE
Sbjct:    3 KVGINGFGRIGRMVFRAAVKNFGNDIQIVGINDLLDAEYLAYMLKYDSVHGRFEGEV-AVEDGALIVNGNKIRLTAEMDPANLKWNEVDADVVVE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 5.543e-14
Identity = 44/106 (41.51%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXN----DPFIDAKYMAYMFKYDSTHGVFKGTIN-------VVDDSTLEING-KLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                     D   DA+Y AY  KYDS HG FK +++       V  D TL +NG +++ V ++R+PA++PWG  GV+YV+E
Sbjct:    4 KVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIE 109          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.456e-14
Identity = 44/113 (38.94%), Postives = 60/113 (53.10%), Query Frame = 2
Query:  335 PPTIQKSRSDGNT----KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            P T + +   G T    KV INGFGRIGR  L                ND     K  +++ KYDS  G FK  + +VD+ T+ ++GK IKV S RDP ++PW + G+D V+E
Sbjct:   39 PKTTRSTPVKGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKHIKVVSSRDPLKLPWAELGIDIVIE 150          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.107e-13
Identity = 44/124 (35.48%), Postives = 63/124 (50.81%), Query Frame = 2
Query:  290 AAKSIQPIRATATEIPPTIQKSRSDGNTKVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            A  S   +RA A      +   R++   +V INGFGRIGR  L                ND     K  +++ KYDST G F   + +VDDS + ++GK IK+ S RDP ++PW +  +D V+E
Sbjct:   14 AVSSKSGVRAKAAR---AVVDVRAEKKIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSG-GVKQASHLLKYDSTLGTFAADVKIVDDSHISVDGKQIKIVSSRDPLQLPWKEMNIDLVIE 133          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.107e-13
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR                 ND   DA  +A++ +YDS HG     ++V D + L +NGK I+V ++RDPA++ WG  GV+ VVE
Sbjct:    4 KVGINGFGRIGRNVFRAALNNPEVEVVAVND-LTDANMLAHLLQYDSVHGKLDAEVSV-DGNNLVVNGKTIEVSAERDPAKLSWGKQGVEIVVE 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.751e-13
Identity = 47/99 (47.47%), Postives = 58/99 (58.59%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXX-NDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEI--NGKL--IKVFSKRDPAEIPWGDYGVDYVVE 655
            +VGINGFGRIGRL                 NDPFI    MAY+FKYD+ HG F GT+ V  +  LEI  NG +  I V + ++PAEIPWG   V+ V+E
Sbjct:    4 RVGINGFGRIGRLVLRVLLSRGMPANVVLINDPFITTDAMAYIFKYDTVHGRFPGTV-VGKEGKLEITLNGHVYDIAVSACKNPAEIPWGASNVEVVIE 101          
The following BLAST results are available for this feature:
BLAST of FC920378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
G3P1_ANASP1.459e-1445.74Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_BACME1.905e-1444.68Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_BUCAP2.488e-1445.74Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3PB_ARATH2.488e-1437.10Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3P_BACFR5.543e-1442.11Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]
G3PG_TRYBB5.543e-1441.51Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3PB_TOBAC9.456e-1438.94Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_CHLRE2.107e-1335.48Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P1_BACSU2.107e-1343.62Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_MASBA2.751e-1347.47Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]

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Properties
Property NameValue
Genbank descriptionC32007E11EF RVDevelop1 Citrus clementina cDNA clone C32007E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920378 ID=FC920378; Name=FC920378; organism=Citrus clementina; type=EST; length=657bp
GGAGCCTACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCT
CGTTAGGGTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAA
CAAATGGCCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGT
CCGCGCCGACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGA
CTGCTGCTTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCA
GTTCCAAGTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAG
TATTCAACCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAA
AATCACGGAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGG
ATTGGAAGGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGT
TGTGGCGGTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGT
TTAAGTATGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTG
GATGACTCCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAA
AAGGGACCCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTG
TTGAATC
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