FC920378

Overview
NameFC920378
Unique NameFC920378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.114e-22
Identity = 53/93 (56.99%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  377 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            +GINGFGRIGRL                NDPFI  +Y AYMFKYDSTHG +KG +   DDS L I+G+ IKVF ++DPA IPWG  GVDYV+E
Sbjct:    5 IGINGFGRIGRLVLRIALQRSDIKVVAVNDPFIAPEYAAYMFKYDSTHGRYKGEVTSKDDS-LVIDGQSIKVFGEKDPASIPWGKAGVDYVIE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.455e-22
Identity = 52/95 (54.74%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  371 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            TKVGINGFGRIGR+                NDPFI+ +Y AYM KYDSTHG FKG I V+ D  LE+NGK +K +++RDPA IPW +    YVVE
Sbjct:    4 TKVGINGFGRIGRIVFRNAIEHDDIDIVAVNDPFIETEYAAYMLKYDSTHGQFKGDIKVLSDG-LEVNGKKVKFYTERDPANIPWAESEAYYVVE 97          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.455e-22
Identity = 51/97 (52.58%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  365 GNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            G  KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+   ++  L ING  I +F +RDP++I WGD G +YVVE
Sbjct:    2 GKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVK-AENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVE 97          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.455e-22
Identity = 53/94 (56.38%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                NDPFID  YM YMFKYDSTHG FKG++  V D  L IN K I VF ++DPA I WG+ G +YVVE
Sbjct:    4 KVGINGFGRIGRIVLRNAIEHGDLEVVAVNDPFIDLDYMVYMFKYDSTHGRFKGSVE-VKDGKLYINNKAIAVFGEKDPANIKWGEAGAEYVVE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 105.916 bits (263), Expect = 1.901e-22
Identity = 52/94 (55.32%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+   ++  L INGK I +F +RDPA I WGD G  YVVE
Sbjct:    3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVK-AENGKLVINGKAITIFQERDPANIKWGDAGATYVVE 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 1.901e-22
Identity = 51/94 (54.26%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG F GT+   D +TL +NGK IK +++RDPA+IPW + G +YVVE
Sbjct:    5 KVGINGFGRIGRIVFRNAIEHEGVDIVAVNDPFIEVHYAAYMLKYDSTHGRFNGTVEF-DGNTLIVNGKKIKFYAERDPAQIPWSETGAEYVVE 97          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.483e-22
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                NDPFI+ KY AYM KYDSTHG+F G I   D + L INGK +K +++RDPA IPW + G DYVVE
Sbjct:    5 KVGINGFGRIGRIVFRNAVEHPDVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGEI-AQDGNDLVINGKKVKFYTERDPAVIPWKETGADYVVE 97          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PC_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Gracilaria verrucosa GN=GAPC PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.483e-22
Identity = 51/94 (54.26%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            +VGINGFGRIGRL                NDPFID +YMAYMFK+DSTHG + G++    D  L +NGK I ++  RDPAEIPW + G DYVVE
Sbjct:    5 QVGINGFGRIGRLVLRAAIEKDTMSVVAINDPFIDLEYMAYMFKFDSTHGRYAGSVE-TKDGKLIVNGKSITIYGHRDPAEIPWAEAGADYVVE 97          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.242e-22
Identity = 50/94 (53.19%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                NDPFI+ KY  YM +YDSTHG FKGTI  V+ S L +NGK +K +++RDP+ IPW + G DY+VE
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHDDIQIVAVNDPFIEPKYAEYMLRYDSTHGNFKGTI-AVEGSDLVVNGKKVKFYTERDPSAIPWSETGADYIVE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.242e-22
Identity = 54/93 (58.06%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  377 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            VGINGFGRIGRL                NDPFI   Y AYMFKYDSTHG FKGT+   +   L INGK I+VF +RDPA IPWG  GVDYV++
Sbjct:    5 VGINGFGRIGRLVLRIALSRDDINVIAINDPFIAPDYAAYMFKYDSTHGKFKGTV-THEGKYLVINGKKIEVFQERDPANIPWGKEGVDYVLD 96          
The following BLAST results are available for this feature:
BLAST of FC920378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
G3P_DEBHA1.114e-2256.99Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_SCLSC1.455e-2254.74Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]
G3P_HUMAN1.455e-2252.58Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P_CRYNE1.455e-2256.38Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_PIG1.901e-2255.32Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P_MONAN1.901e-2254.26Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P_COLLN2.483e-2255.32Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3PC_GRAVE2.483e-2254.26Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_SORMA3.242e-2253.19Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]
G3P_PICAN3.242e-2258.06Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]

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Properties
Property NameValue
Genbank descriptionC32007E11EF RVDevelop1 Citrus clementina cDNA clone C32007E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920378 ID=FC920378; Name=FC920378; organism=Citrus clementina; type=EST; length=657bp
GGAGCCTACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCT
CGTTAGGGTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAA
CAAATGGCCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGT
CCGCGCCGACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGA
CTGCTGCTTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCA
GTTCCAAGTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAG
TATTCAACCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAA
AATCACGGAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGG
ATTGGAAGGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGT
TGTGGCGGTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGT
TTAAGTATGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTG
GATGACTCCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAA
AAGGGACCCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTG
TTGAATC
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