FC920378

Overview
NameFC920378
Unique NameFC920378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 3.242e-22
Identity = 51/94 (54.26%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVG+NGFGRIGRL                NDPFID  YM YMFKYDSTHG FKGT+   ++  L ING  I +F +RDP+ I W D G +YVVE
Sbjct:    3 KVGVNGFGRIGRLVTRAAVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGHFKGTVK-AENGKLVINGHAITIFQERDPSNIKWADAGAEYVVE 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.235e-22
Identity = 51/94 (54.26%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                NDPFI+ KY AYM KYDSTHG+F G I   + + L INGK +K +++RDPA IPW + G DYVVE
Sbjct:    5 KVGINGFGRIGRIVFRNAIEHPEVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGEIK-QEGNDLVINGKTVKFYTERDPAAIPWKETGADYVVE 97          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.235e-22
Identity = 53/94 (56.38%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            K+GINGFGRIGRL                NDPFI   Y AYMFKYDSTHG +KG +    D  L I+G  IKVF +RDPA IPWG  GVDYV+E
Sbjct:    4 KIGINGFGRIGRLVLRVALGRKDIEVVAVNDPFIAPDYAAYMFKYDSTHGRYKGEVTASGDD-LVIDGHKIKVFQERDPANIPWGKSGVDYVIE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 5.531e-22
Identity = 50/94 (53.19%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVG+NGFGRIGRL                NDPFID  YM YMFKYDSTHG F+GT+   ++  L ING  I +F +RDP+ I W D G +YVVE
Sbjct:    3 KVGVNGFGRIGRLVTRAAILSAKVQVVAINDPFIDLNYMVYMFKYDSTHGHFRGTVK-AENGKLVINGNAITIFQERDPSNIKWADAGAEYVVE 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.531e-22
Identity = 52/95 (54.74%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  371 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            T+VGINGFGRIGR+                NDPFI  +YM YMFKYDS HG F+GT+    D  L +NGK I VFS+RDPA+IPWG     YVVE
Sbjct:    3 TQVGINGFGRIGRIVLRASLSNPEVQVVAINDPFIPLEYMVYMFKYDSVHGRFQGTVE-AKDGKLVVNGKEISVFSERDPAQIPWGSVEAAYVVE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_PLESA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pleurotus sajor-caju GN=GPD PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.223e-22
Identity = 51/93 (54.84%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  377 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            VGINGFGRIGR+                NDPFID  YM YMFKYDS HG FKG+I    D  L + GK I +F+++DPA IPWG  G DYVVE
Sbjct:    4 VGINGFGRIGRIVFRNALEVGGVDVVAINDPFIDLDYMVYMFKYDSVHGRFKGSIE-AKDGKLIVEGKPIHIFAEKDPANIPWGSVGADYVVE 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 7.223e-22
Identity = 50/94 (53.19%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+   ++  L INGK I +F +RDP  I WG+ G +YVVE
Sbjct:    3 KVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVK-AENGKLVINGKPITIFQERDPTNIKWGEAGAEYVVE 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.223e-22
Identity = 51/94 (54.26%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG F+GTI   D+  L +NGK I+ F++RDPA IPWG  G  Y+VE
Sbjct:    5 KVGINGFGRIGRIVFRNAIASGDVDVVAVNDPFIETHYAAYMLKYDSTHGRFQGTIETYDEG-LIVNGKKIRFFAERDPAAIPWGSAGAAYIVE 97          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_PHACH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phanerochaete chrysosporium GN=GPD PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.434e-22
Identity = 49/94 (52.13%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            K GINGFGRIGR+                NDPFID +YM YMFKYDS HG FKG++    D  L + GK I VF+++DPA IPWG  G +Y+VE
Sbjct:    4 KAGINGFGRIGRIVLRNALLHGDIDVVAVNDPFIDLEYMVYMFKYDSVHGRFKGSVE-AKDGKLYVEGKPIHVFAEKDPANIPWGSVGAEYIVE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.232e-21
Identity = 50/93 (53.76%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  377 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            +GINGFGRIGR+                NDPFID +YM YM KYDSTHGVF G I+   D  L +NGK I VF+++DP+ IPWG  G  YVVE
Sbjct:    6 IGINGFGRIGRIVFRNSVVHNTANVVAINDPFIDLEYMVYMLKYDSTHGVFNGDIS-TKDGKLIVNGKSIAVFAEKDPSNIPWGQAGAHYVVE 97          
The following BLAST results are available for this feature:
BLAST of FC920378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
G3P_CHICK3.242e-2254.26Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P_COLGL4.235e-2254.26Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_CANAL4.235e-2256.38Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P_COLLI5.531e-2253.19Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3P2_RHIRA5.531e-2254.74Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P_PLESA7.223e-2254.84Glyceraldehyde-3-phosphate dehydrogenase OS=Pleuro... [more]
G3P_MOUSE7.223e-2253.19Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_ASPOR7.223e-2254.26Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_PHACH9.434e-2252.13Glyceraldehyde-3-phosphate dehydrogenase OS=Phaner... [more]
G3P_USTMA1.232e-2153.76Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]

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Properties
Property NameValue
Genbank descriptionC32007E11EF RVDevelop1 Citrus clementina cDNA clone C32007E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920378 ID=FC920378; Name=FC920378; organism=Citrus clementina; type=EST; length=657bp
GGAGCCTACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCT
CGTTAGGGTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAA
CAAATGGCCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGT
CCGCGCCGACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGA
CTGCTGCTTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCA
GTTCCAAGTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAG
TATTCAACCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAA
AATCACGGAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGG
ATTGGAAGGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGT
TGTGGCGGTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGT
TTAAGTATGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTG
GATGACTCCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAA
AAGGGACCCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTG
TTGAATC
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