FC920378

Overview
NameFC920378
Unique NameFC920378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:86..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.986e-21
Identity = 51/100 (51.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:  359 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            S G  K+GINGFGRIGRL                NDPFI   YM+YMFKYDS HG +K   +NV D  TL    K + VF  R+P EIPWG+ G +YVVE
Sbjct:    3 STGKIKIGINGFGRIGRLVARVALTRDDIELVGVNDPFISTDYMSYMFKYDSVHGKWKHHEVNVKDSKTLLFGEKSVAVFGCRNPEEIPWGEVGAEYVVE 102          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.043e-20
Identity = 47/94 (50.00%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                NDPFI+ +Y AYM KYDSTHG F G I  V+D  L +N + +K ++KR+P EIPW + G +Y+VE
Sbjct:    5 KVGINGFGRIGRIVFRNAAQSCEVEVVAVNDPFIEPEYAAYMLKYDSTHGQFNGDIQTVEDG-LVVNSRNVKFYNKRNPEEIPWAETGAEYIVE 97          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.362e-20
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG +    ++ L+++GK ++ + +RDPA IPW + G DYV+E
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFKGDVK-FSENGLDVDGKHVRFYQERDPANIPWAETGADYVIE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.362e-20
Identity = 50/94 (53.19%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG I  VD + L +NGK I+   ++DPA IPW + G  YVVE
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHNDVDIVAVNDPFIEPHYAAYMLKYDSTHGQFKGDIK-VDGNNLTVNGKTIRFHMEKDPANIPWSETGAYYVVE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.362e-20
Identity = 51/97 (52.58%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKL---IKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGRL                NDPFI+  YM YMFKYDSTHG FKG+++      +  NGK    I V + +DPAEIPWG  G +YVVE
Sbjct:    5 KVGINGFGRIGRLVLRAAVEKDTVDVVAVNDPFINIDYMVYMFKYDSTHGRFKGSVSAEGGKLIVTNGKTTHHISVHNSKDPAEIPWGVDGAEYVVE 101          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.362e-20
Identity = 51/100 (51.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:  359 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            S G  K+GINGFGRIGRL                NDPFI   YM YMFKYDS HG +K   + V D +TL    K + VF  R+P EIPWG+ GV+YVVE
Sbjct:    3 STGKIKIGINGFGRIGRLVARVALLRDDIELVAVNDPFISTDYMTYMFKYDSVHGQWKKHEVKVKDSNTLLFGEKAVTVFGCRNPEEIPWGETGVEYVVE 102          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.779e-20
Identity = 49/94 (52.13%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG I  VD + L +NGK ++   ++DPA IPW + G  YVVE
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSTHGQFKGDIK-VDGNNLTVNGKTVRFHMEKDPANIPWSETGAYYVVE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.324e-20
Identity = 49/93 (52.69%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  377 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            VGINGFGRIGRL                NDPFI  +Y AYMFKYDSTH  +KG ++    + + I+GK I VF +RDP  IPWG  GVDYV+E
Sbjct:    5 VGINGFGRIGRLVLRVALSRADIKVVAINDPFIAPEYAAYMFKYDSTHKAYKGEVSA-SGNKINIDGKEITVFQERDPVNIPWGKAGVDYVIE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.324e-20
Identity = 50/95 (52.63%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  371 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            +K+GINGFGRIGRL                NDPFID  YM Y+FKYDSTHG FKGT+   D   L +NGK I VF +RDP  I W   G +Y+VE
Sbjct:    2 SKIGINGFGRIGRLVLRAALDKGAEVVAV-NDPFIDVNYMVYLFKYDSTHGRFKGTV-AADGGFLVVNGKKITVFCERDPTNINWASAGAEYIVE 94          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.324e-20
Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  377 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            +GINGFGRIGRL                N+PF+D KYM YMFKYDSTHG FKGT+  ++   + +NG  I VF+++DPA I W   G +Y+VE
Sbjct:    5 IGINGFGRIGRLVLRASLENPECRVLAINEPFMDVKYMVYMFKYDSTHGRFKGTVEDINGEFV-VNGNKIHVFAEKDPANIKWSSVGAEYIVE 96          
The following BLAST results are available for this feature:
BLAST of FC920378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
G3PC_PINSY7.986e-2151.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ERYGR1.043e-2050.00Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P_COCP71.362e-2048.94Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_COCHE1.362e-2053.19Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_BRUMA1.362e-2052.58Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3PC_GINBI1.362e-2051.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CURLU1.779e-2052.13Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_PICPA2.324e-2052.69Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_GLOMM2.324e-2052.63Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3P_DICDI2.324e-2049.46Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]

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Properties
Property NameValue
Genbank descriptionC32007E11EF RVDevelop1 Citrus clementina cDNA clone C32007E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920378 ID=FC920378; Name=FC920378; organism=Citrus clementina; type=EST; length=657bp
GGAGCCTACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCT
CGTTAGGGTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAA
CAAATGGCCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGT
CCGCGCCGACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGA
CTGCTGCTTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCA
GTTCCAAGTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAG
TATTCAACCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAA
AATCACGGAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGG
ATTGGAAGGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGT
TGTGGCGGTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGT
TTAAGTATGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTG
GATGACTCCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAA
AAGGGACCCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTG
TTGAATC
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