FC920378

Overview
NameFC920378
Unique NameFC920378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.723e-19
Identity = 47/94 (50.00%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KV INGFGRIGRL                NDPFI   Y AYMFKYDSTHG +KG +     + L I+G  I VF ++DPA +PWG  GVD V++
Sbjct:    3 KVAINGFGRIGRLVLRIALQRKALEVVAVNDPFISVDYAAYMFKYDSTHGRYKGEV-TTSGNDLVIDGHKIAVFQEKDPANLPWGKLGVDIVID 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_HAEIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Haemophilus influenzae GN=gapA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.475e-19
Identity = 49/94 (52.13%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            K+GINGFGRIGR+                ND  ID +YMAYM KYDSTHG F GT+  V D  L +NGK I+V ++RDPA + WG  GVD  VE
Sbjct:    4 KIGINGFGRIGRIVFRAAQHRDDIEVVGIND-LIDVEYMAYMLKYDSTHGRFDGTVE-VKDGNLVVNGKTIRVTAERDPANLNWGAIGVDIAVE 95          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.475e-19
Identity = 47/97 (48.45%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  365 GNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            G  K+GINGFGRIGRL                NDPFIDA+YMAYMFKYDS H  + G +N   D  L + G+ I  F++ DP++I WG  G D V+E
Sbjct:    3 GKIKIGINGFGRIGRLVMRATMLRPDIEVVAINDPFIDAEYMAYMFKYDSVHKTWPGHVNGSKDGFL-VEGRKIHTFTESDPSKINWGAAGADIVIE 98          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.475e-19
Identity = 52/97 (53.61%), Postives = 57/97 (58.76%), Query Frame = 2
Query:  377 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEI-NGK---LIKVFSKRDPAEIPWGDYGVDYVVE 655
            VGINGFGRIGRL                NDPFI   YM Y+F+YDSTHG FKGT+    D  L    GK    IKV++ RDPAEI WG  G DYVVE
Sbjct:    6 VGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKSQHKIKVYNSRDPAEIQWGSAGADYVVE 102          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.762e-19
Identity = 46/94 (48.94%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVGINGFGRIGR+                NDPFI  +YM YMFKYDS HG FKGT+       L ++GK I VF ++D   IPW   G +Y+VE
Sbjct:    4 KVGINGFGRIGRIVLRNALLNPEVNVVAVNDPFIALEYMVYMFKYDSVHGRFKGTVE-TKGGKLIVDGKEISVFGEKDAGAIPWSSVGAEYIVE 96          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.762e-19
Identity = 48/98 (48.98%), Postives = 56/98 (57.14%), Query Frame = 2
Query:  365 GNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFK-GTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            G  K+GINGFGRIGRL                NDPFI   YM YMFKYD+ HG +K   I + D  TL    K + VF  R+P EIPWG+ G +YVVE
Sbjct:    2 GKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIALKDSKTLLFGEKPVTVFGIRNPEEIPWGEAGAEYVVE 99          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.762e-19
Identity = 47/95 (49.47%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFK-GTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            K+GINGFGRIGRL                NDPFI   YMAYMFKYD+ HG +K   + V D+ TL    K + VF  R+P EIPW + G +YVVE
Sbjct:    5 KIGINGFGRIGRLVARVALVRDDVELVAVNDPFITVDYMAYMFKYDTVHGQYKHHELKVKDEKTLLFGDKPVAVFGLRNPEEIPWAETGAEYVVE 99          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.762e-19
Identity = 46/100 (46.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:  359 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFK-GTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            +D   ++GINGFGRIGRL                NDPFI  +YM YMFKYDS HG +K   + + D+ TL    K + VF  R+P +IPW + G DYVVE
Sbjct:    2 ADKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVE 101          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.762e-19
Identity = 52/123 (42.28%), Postives = 60/123 (48.78%), Query Frame = 2
Query:  374 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDD-----------------------------STLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            KVG+NGFGRIGRL                NDPFID  YM YMFKYDSTHG FK  I  ++D                               L ING  I +F +RDP++I WGD G +YVVE
Sbjct:    3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFKYDSTHGKFKVDIVAINDPFIDLNYMVYMFKYDSTHGKFKGTVKAENGKLVINGHAITIFQERDPSKIKWGDAGAEYVVE 125          
BLAST of FC920378 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.762e-19
Identity = 45/93 (48.39%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  377 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVE 655
            VGINGFGRIGRL                NDPF+D +YMAY+FKYDS HG ++G +    D  L I+G  I  F++R+PA I W D G +Y+VE
Sbjct:    4 VGINGFGRIGRLVLRNALQMQILTVVAVNDPFLDVEYMAYLFKYDSVHGRYQGKVE-TKDGKLIIDGHKIAAFAEREPANIKWADCGAEYIVE 95          
The following BLAST results are available for this feature:
BLAST of FC920378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
G3P1_KLULA5.723e-1950.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_HAEIN7.475e-1952.13Glyceraldehyde-3-phosphate dehydrogenase OS=Haemop... [more]
G3PC_CHLRE7.475e-1948.45Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_CAEBR7.475e-1953.61Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P_LENED9.762e-1948.94Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]
G3PD_MAIZE9.762e-1948.98Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL9.762e-1949.47Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH9.762e-1946.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_JACOR9.762e-1942.28Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
G3P1_AGABI9.762e-1948.39Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]

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Properties
Property NameValue
Genbank descriptionC32007E11EF RVDevelop1 Citrus clementina cDNA clone C32007E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920378 ID=FC920378; Name=FC920378; organism=Citrus clementina; type=EST; length=657bp
GGAGCCTACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCT
CGTTAGGGTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAA
CAAATGGCCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGT
CCGCGCCGACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGA
CTGCTGCTTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCA
GTTCCAAGTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAG
TATTCAACCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAA
AATCACGGAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGG
ATTGGAAGGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGT
TGTGGCGGTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGT
TTAAGTATGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTG
GATGACTCCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAA
AAGGGACCCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTG
TTGAATC
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