FC920380

Overview
NameFC920380
Unique NameFC920380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2223 contig Ccv1_Contig2223:1278..1968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: AKR1_CRYNE (Palmitoyltransferase AKR1 OS=Cryptococcus neoformans GN=AKR1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 58/198 (29.29%), Postives = 82/198 (41.41%), Query Frame = 2
Query:  194 DKDLFKAAETGDSSTFXXXXXXXXXXXXXXRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNL---------------------------------KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            D D+   A+ GD++                R+  D T LH AA   H     +L  +D  A++     E    P+  AA  G++ +V +L+S+GAD N+                                 K+  G TAL +AA +G    V+LLI  GA +NS D  G T LH  A  GN      L+E GA +DA
Sbjct:   70 DLDIHALAQRGDTAAIAAMLQENPSLNLSARDAQDVTPLHWAAINAHMGTCRLL--IDSGADIDAIGGELKATPLQWAARNGHLYVVHLLISRGADPNIHDSQGFNTLHLITHSSAVMPLLYMLHQPVAIDEKDTDGHTALMWAAYQGDALSVDLLIRHGASVNSTDNAGMTPLHWAAVKGNKVSIMHLVEAGASLDA 265          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: YB044_HUMAN (Putative ankyrin repeat domain-containing protein encoded by NCRNA00164 OS=Homo sapiens GN=NCRNA00164 PE=5 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 44/132 (33.33%), Postives = 68/132 (51.52%), Query Frame = 2
Query:  293 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            ++RT+L  A  C       IL+      N+V   D  G   +H A +  N+++V  LLS GAD+ +KN  G T L  A  K   +IVE L+++ A  N+ DK  CTAL      G+S +   L+++  ++ A
Sbjct:  104 ENRTILMKALQCQREACANILIDSGADPNIV---DVYGNTAVHYAVNSENLSVVAKLLSCGADIEVKNKAGHTPLLLAIRKRSEEIVEFLLTKNANANAVDKFKCTALMLAICHGSSEIVGKLLQQNVDICA 232          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ASB3_BOVIN (Ankyrin repeat and SOCS box protein 3 OS=Bos taurus GN=ASB3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 46/131 (35.11%), Postives = 70/131 (53.44%), Query Frame = 2
Query:  293 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 685
            ++ T L +A   G  +V+ +LL     ANV  +    GW  +H A+  GN  I+++LL KGA+   ++D G T L  AA  G L+ + +LIS GA +N +     T L   A  G++   ELL+  GA+ D
Sbjct:  111 EETTPLFLAVENGQIDVLRLLLRY--GANVNGSHSMCGWNALHQASFQGNAEIIKLLLKKGANKECQDDFGITPLFVAAQYGKLESLSILISSGADVNCQALDKATPLFIAAQEGHTECVELLLSSGADPD 239          

HSP 2 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 41/124 (33.06%), Postives = 66/124 (53.23%), Query Frame = 2
Query:  308 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN-SKDKVGCTALHRGASTGNSALCELLIEEGA 676
            +H A+     E + +L+  D S N +     EG+  +H AAS G+  I+++LL  GAD N       T L  A   G + ++ LL+  GA +N S    G  ALH+ +  GN+ + +LL+++GA
Sbjct:   47 IHEASYHNSVECLRMLIRADSSENYIKTKTFEGFCALHLAASQGHWKIIQILLEAGADPNATTLEETTPLFLAVENGQIDVLRLLLRYGANVNGSHSMCGWNALHQASFQGNAEIIKLLLKKGA 170          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: WARA_DICDI (Homeobox protein Wariai OS=Dictyostelium discoideum GN=warA PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 39/135 (28.89%), Postives = 76/135 (56.30%), Query Frame = 2
Query:  287 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE-EGAEVDA 688
            + ++RT LH A   G+  + ++L+    +   +NA+D +G  P+H+++ +G+  I  +LL  GAD N+++  G T +HYA  +  ++ V+ LI   +K+N K K G   +H      +  + +++ E +G E+ A
Sbjct:  505 DSNNRTPLHHACIMGYFSIAKLLIC---NGADMNAIDIDGHTPLHTSSLMGHDLITRLLLENGADPNIQDSEGYTPIHYAVRESRIETVKFLIKFNSKLNIKTKNGQNLIHLSVQFASLMMGQMIFESKGCEIAA 636          

HSP 2 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            +++   T L  A+  G+  +VE+LL      N+VN   +EG +P+ SA   G++ I   LL   A+V++K    G T LH A+ KG+ KI +LLI   AK +  D    T LH     G  ++ +LLI  GA+++A
Sbjct:  404 KDNQGNTPLIAASVLGNQPIVELLLEHRADPNLVN---DEGVSPLFSACKGGHLQIASSLLDHDAEVSVKTKINGETPLHIASLKGFEKICKLLIETEAKASVIDSNNRTPLHHACIMGYFSIAKLLICNGADMNA 536          

HSP 3 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = 2
Query:  287 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 679
            ND+  + L  A   GH ++   LL  D   +V   ++ E   P+H A+  G   I ++L+   A  ++ +   RT LH+A   G+  I +LLI  GA +N+ D  G T LH  +  G+  +  LL+E GA+
Sbjct:  438 NDEGVSPLFSACKGGHLQIASSLLDHDAEVSVKTKINGE--TPLHIASLKGFEKICKLLIETEAKASVIDSNNRTPLHHACIMGYFSIAKLLICNGADMNAIDIDGHTPLHTSSLMGHDLITRLLLENGAD 566          

HSP 4 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 49/133 (36.84%), Postives = 70/133 (52.63%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIEEGAE 679
            R+    +LL  AA  G+   V  L+   ES    N  D +G  P+ +A+ +GN  IVE+LL   AD NL ND G + L  A   G L+I   L+   A+++ K K+ G T LH  +  G   +C+LLIE  A+
Sbjct:  371 RDSKGLSLLFTAAFLGYEYQVRRLI---ESGANPNIKDNQGNTPLIAASVLGNQPIVELLLEHRADPNLVNDEGVSPLFSACKGGHLQIASSLLDHDAEVSVKTKINGETPLHIASLKGFEKICKLLIETEAK 500          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: NFKB2_CHICK (Nuclear factor NF-kappa-B p100 subunit OS=Gallus gallus GN=NFKB2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 45/131 (34.35%), Postives = 74/131 (56.49%), Query Frame = 2
Query:  302 TLLHVAASCGHPEVVEILLSVDESAN--VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN-LKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 682
            +LLH+A      E++ +LL+   SA   +++  + +G  P+H A    +   +++L+ KGADVN ++  GGRT LH A     L +   L+ + GA +NS+   G T LH  A  G+  L +LL++ GA+V
Sbjct:  547 SLLHLALQAADEEMLRMLLAHLASATPYLLHLPNFQGLLPVHLAVKAKSPACLDLLVRKGADVNGVERQGGRTPLHLAVEMENLNMATHLVKKLGANVNSRTFAGNTPLHLAAGLGSPTLTKLLLKAGADV 677          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: MIB1_DANRE (E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK---INSKDKVGCTALHRGASTGNSALCELLIEEG 673
            RN   +T LH+A + GH +VV+ LL      ++    D EG  P+H A S     ++ +LL  GADV + N+ G  ALH+AA +G    + +L+S+  +   ++ K   G TALH  A   +  + ELL+ +G
Sbjct:  526 RNKRRQTPLHIAVNKGHLQVVKTLLDFGCHPSLQ---DSEGDTPLHDAISKKRDDMLSVLLEAGADVTITNNNGFNALHHAALRGNPSAMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQG 655          

HSP 2 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 44/132 (33.33%), Postives = 73/132 (55.30%), Query Frame = 2
Query:  302 TLLHVAASCGHPEVVEILL--SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT 691
            T +  A+  GH +V+++LL  SVD     + A D++G   +H A+     +++E+L   GAD+N +N   +T LH A +KG L++V+ L+  G   + +D  G T LH   S     +  +L+E GA+V  T
Sbjct:  466 TAMQAASQNGHVDVLKLLLKHSVD-----LEAEDKDGDRAVHHASFGDEGSVIEVLHRGGADLNARNKRRQTPLHIAVNKGHLQVVKTLLDFGCHPSLQDSEGDTPLHDAISKKRDDMLSVLLEAGADVTIT 592          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ANKS3_HUMAN (Ankyrin repeat and SAM domain-containing protein 3 OS=Homo sapiens GN=ANKS3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = 2
Query:  308 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 685
            LH AAS G  EVV+  +   E    +N  +  GW P+  A+ IG+ TIV +LL  G  VN+    G+T L  A+S G   I   L+ +GA++  KD  G TAL    S G+  +   L++ GA  +
Sbjct:   39 LHTAASIGQYEVVKECVQRRELD--LNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQHMVRFLLDSGANAN 162          

HSP 2 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIEEGAEVDA 688
            +N    T L  A+  GH  +V +LL    S NV      EG  P+  A+S GN +I   LL +GA++ +K+  G TAL +  S G   +V  L+  GA  N ++ + G T L   A+ G+  + +  +  G +VDA
Sbjct:   65 KNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTP---EGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQHMVRFLLDSGANANVREPICGFTPLMEAAAAGHEIIVQYFLNHGVKVDA 197          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: TRPA1_HUMAN (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 43/134 (32.09%), Postives = 73/134 (54.48%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK-DKVGCTALHRGASTGNSALCELLIEEGAEV 682
            ++ D ++ LH AAS G     + LL       ++N  D  G  P+H AA  G+  +V++LL KGA + L +  G TALH+A+  G+ + +++++    K   + D+ G TALH  A  G++    LL+   A++
Sbjct:  442 KSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGA-LFLSDHNGWTALHHASMGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADI 574          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: RN5A_HUMAN (2-5A-dependent ribonuclease OS=Homo sapiens GN=RNASEL PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 46/131 (35.11%), Postives = 67/131 (51.15%), Query Frame = 2
Query:  293 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 685
            +D  LL  A      ++V+ LL  +  ANV    +E GW P+H+A  +    IVE+LL  GAD  L+   G T    AA  G +K+++L +S+GA +N  D  G TA    A  G     + L + GA V+
Sbjct:   24 EDNHLLIKAVQNEDVDLVQQLL--EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 152          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: MIB2_CHICK (E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus GN=MIB2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 43/123 (34.96%), Postives = 65/123 (52.85%), Query Frame = 2
Query:  299 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 667
            RT L +A+  GH +VV+ILL    +   VN  DEEG   +H AA      +  +L++KGA  +L N+   TAL+ A S+G+ ++V+ L      +N  D  G T LH   +     + E+L E
Sbjct:  466 RTALQIASYQGHLDVVKILLQAHAT---VNLRDEEGDTALHYAAFGNQADVARVLMAKGAGADLLNNAKCTALYVAVSQGFTEVVQALCELNCDVNLPDSHGDTPLHYAITADYKVIIEILTE 585          

HSP 2 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 36/106 (33.96%), Postives = 68/106 (64.15%), Query Frame = 2
Query:  305 LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH 619
            LLH +A  G+   ++ +L+   +  +V++  E+G+  +H AA   +  + E+L+ +G  DVN+KN+  +T LH A  +G + +V+LL+S G+ +N++D+ G TA+H
Sbjct:  601 LLHYSALKGNKLAIKKILA--RARQLVDSKKEDGFTALHLAALNNHKEVAEILIKEGRCDVNVKNNRNQTPLHLAIIQGHVGLVQLLVSEGSDVNAEDEDGDTAMH 704          
The following BLAST results are available for this feature:
BLAST of FC920380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
AKR1_CRYNE1.960e-1229.29Palmitoyltransferase AKR1 OS=Cryptococcus neoforma... [more]
YB044_HUMAN2.560e-1233.33Putative ankyrin repeat domain-containing protein ... [more]
ASB3_BOVIN2.560e-1235.11Ankyrin repeat and SOCS box protein 3 OS=Bos tauru... [more]
WARA_DICDI3.343e-1228.89Homeobox protein Wariai OS=Dictyostelium discoideu... [more]
NFKB2_CHICK3.343e-1234.35Nuclear factor NF-kappa-B p100 subunit OS=Gallus g... [more]
MIB1_DANRE3.343e-1234.59E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN... [more]
ANKS3_HUMAN3.343e-1236.51Ankyrin repeat and SAM domain-containing protein 3... [more]
TRPA1_HUMAN4.367e-1232.09Transient receptor potential cation channel subfam... [more]
RN5A_HUMAN4.367e-1235.112-5A-dependent ribonuclease OS=Homo sapiens GN=RNA... [more]
MIB2_CHICK4.367e-1234.96E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus ... [more]

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Properties
Property NameValue
Genbank descriptionC32007F01EF RVDevelop1 Citrus clementina cDNA clone C32007F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920380 ID=FC920380; Name=FC920380; organism=Citrus clementina; type=EST; length=691bp
GGGGAAGGAGTAAAGTGACGAACCGCGCACCGGGTGAGAACCGGACACAA
CCGAACCGCACCATACCATTGCGCACCGCTTTCGACTTGCAACTAGCTCG
CCGCTGGACCAAATCACACCGTCAAAACTCTAATTCTCGGCAAATTGACA
GTACAATTCCGGTATGGACATGGACATCGATCAAACAATCAAGGACAAAG
ACCTCTTCAAAGCCGCCGAAACTGGAGATTCCTCAACATTCAAATCCCTC
TCAAAACAGCAGCTCTTAAAATCTCTCTCCTTGCGGAACGACGACGACCG
CACCCTCCTCCACGTCGCCGCCTCATGTGGTCACCCCGAGGTGGTGGAAA
TATTGTTGAGTGTTGATGAGTCGGCGAATGTAGTAAACGCTGTTGATGAA
GAAGGGTGGGCTCCGATTCATTCTGCGGCTAGCATTGGCAATGTGACAAT
CGTGGAAATGTTGTTAAGCAAAGGAGCTGATGTAAATTTGAAGAATGATG
GTGGGCGAACCGCTCTTCACTATGCTGCCAGCAAGGGATGGTTGAAGATT
GTGGAACTTCTGATCTCACGTGGTGCAAAAATTAACTCCAAGGACAAGGT
TGGTTGCACAGCATTGCACCGGGGAGCTAGTACAGGGAATTCAGCATTGT
GTGAACTCTTAATTGAAGAAGGAGCAGAGGTTGATGCTACT
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