FC920380

Overview
NameFC920380
Unique NameFC920380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2223 contig Ccv1_Contig2223:1278..1968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: INVS_MOUSE (Inversin OS=Mus musculus GN=Invs PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 46/133 (34.59%), Postives = 74/133 (55.64%), Query Frame = 2
Query:  299 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI--NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT 691
            RT LH AA  GH ++V +LL  ++S  + +  D +G  P+H AA       V++ L   +  +  +  GRT+  +AA KG   ++  ++S  + I  N  DK G TALH  A +G+ +  +LL++  A+VDAT
Sbjct:  256 RTPLHWAALLGHAQIVHLLLERNKSGTIPS--DSQGATPLHYAAQSNFAETVKVFLQHPSVKDDSDLEGRTSFMWAAGKGNDDVLRTMLSLKSDIDINMSDKYGGTALHAAALSGHVSTVKLLLDNDAQVDAT 386          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: CTTB2_FELCA (Cortactin-binding protein 2 OS=Felis catus GN=CTTNBP2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 47/126 (37.30%), Postives = 69/126 (54.76%), Query Frame = 2
Query:  302 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 679
            TLL  AA+ G+  ++ +LL+  E    +N   E+G + ++SAA  G+   V +LL+ GA VN  +  G T L  AA++G  K VELLIS  A IN     G T L+     G+    +LL+E G +
Sbjct:  709 TLLQQAATQGNVTLLSMLLN--EEGLDINYSCEDGHSALYSAAKNGHTDCVRLLLNAGAQVNAADTNGFTPLCAAAAQGHFKCVELLISYDANINHAADEGQTPLYLACKNGSKECIQLLLEAGTD 832          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: V246_FOWPV (Putative ankyrin repeat protein FPV246 OS=Fowlpox virus GN=FPV246 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 49/126 (38.89%), Postives = 69/126 (54.76%), Query Frame = 2
Query:  302 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK-VGCTALHRGASTGNSALCELLIEEGA 676
            T LH A   G  E V  L+S     + V+  D  G  P+  A   GN  I ++L+ KGAD N+ N  G T LH AA+ G + +V LL+S G  I++KDK +G T L  G    +  + +LL+E+GA
Sbjct:  291 TPLHAATRSGSVETVNALISY---GSTVDIKDNIGSTPLMHAC--GNKDISKLLIEKGADPNISNIHGYTPLHNAAAYGSVDVVNLLLSYGVSIDAKDKIIGSTPLDHGVH--HPEIVKLLLEKGA 409          

HSP 2 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 47/134 (35.07%), Postives = 72/134 (53.73%), Query Frame = 2
Query:  287 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            N D + L  VA+  G+  V+  LL +  +   VN+ D  G  P+H+A   G+V  V  L+S G+ V++K++ G T L +A   G   I +LLI +GA  N  +  G T LH  A+ G+  +  LL+  G  +DA
Sbjct:  254 NHDSKILCRVASK-GYINVIHFLLDIGFN---VNSFDSFGETPLHAATRSGSVETVNALISYGSTVDIKDNIGSTPLMHAC--GNKDISKLLIEKGADPNISNIHGYTPLHNAAAYGSVDVVNLLLSYGVSIDA 381          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: UACA_BOVIN (Uveal autoantigen with coiled-coil domains and ankyrin repeats protein OS=Bos taurus GN=UACA PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 49/128 (38.28%), Postives = 65/128 (50.78%), Query Frame = 2
Query:  299 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 682
            R  LH+AA  GH   ++ LL  +        VD +G   +H AA     + +++L   GA VN K+  GRT L  A       I +LLI RGA INS+DK   TAL  G   G     E+LI+ GA+V
Sbjct:   89 RNALHLAAKYGHALCLQKLLQYNCPTE---HVDLQGRTALHDAAMADCPSSIQLLCDHGASVNAKDVDGRTPLVLATQMCRPTICQLLIDRGADINSRDKQNRTALMLGCEYGCKDAVEVLIKNGADV 213          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: KDIS_RAT (Kinase D-interacting substrate of 220 kDa OS=Rattus norvegicus GN=Kidins220 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 48/136 (35.29%), Postives = 75/136 (55.15%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT 691
            RN+  +T L +AA  G+ E+V+ LL     AN  N  D + W  + SA+  G++ IVE LL  GA +  ++ GG TAL +A  KG   +VELL+S GA  +         +   A  G++ +  LL++ GA+V+ +
Sbjct:   34 RNECGQTPLMLAAEQGNVEIVKELLK--NGAN-CNLEDLDNWTALISASKEGHIHIVEELLKSGASLEHRDMGGWTALMWACYKGRTDVVELLLSHGANPSVTGLYSVYPIIWAAGRGHADIVHLLLQNGAKVNCS 166          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: INVSB_XENLA (Inversin-B OS=Xenopus laevis GN=invs-B PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 45/132 (34.09%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  293 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            + RT L  AA  G  EVV  +L ++    V N  D+ G   +H+A+  G +T V +LL   A  +  +    T L  A   G  +++  LI  GAK++  DK G + LH  A  GN+ +C++LIE     DA
Sbjct:  317 EGRTALMWAAGKGSDEVVRTMLELNPKLEV-NRTDKYGGTALHAASLSGQITTVRILLENRAQADAVDVMKHTPLFRACEMGHREVIATLIKGGAKVHLVDKDGRSPLHWAALGGNANVCQILIENNINPDA 447          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: GABP2_HUMAN (GA-binding protein subunit beta-2 OS=Homo sapiens GN=GABPB2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 2
Query:  404 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            G +P+H AA  G+ +  E+LL  G   + +    RT LH AA+ G   IVELL+  GA +N+KD +  TALH      +  + ELLI+ GA+V A
Sbjct:   38 GTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATERHHRDVVELLIKYGADVHA 132          

HSP 2 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 44/120 (36.67%), Postives = 63/120 (52.50%), Query Frame = 2
Query:  308 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 667
            LH+AA  GH    E+LL    S +    VD     P+H AA+ G+  IVE+L+  GADVN K+    TALH+A  +    +VELLI  GA +++  K   +A        N+ +  +L E
Sbjct:   42 LHLAAQYGHYSTAEVLLRAGVSRDARTKVDR---TPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATERHHRDVVELLIKYGADVHAFSKFDKSAFDIALEKNNAEILVILQE 158          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ANR16_HUMAN (Ankyrin repeat domain-containing protein 16 OS=Homo sapiens GN=ANKRD16 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 46/126 (36.51%), Postives = 68/126 (53.97%), Query Frame = 2
Query:  302 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGR-TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 673
            T L  A  CGH +V  +LL  DE    ++A D  G   +H AA  G    +  L+S+ G DV+++      TALHYAA +G    ++ L+S GA INSKD+   +ALH   +  + A  + L++ G
Sbjct:  207 TALMDAIQCGHIDVARLLL--DEHGACLSAEDSLGAQALHRAAVTGQDEAIRFLVSELGVDVDVRATSTHLTALHYAAKEGHTSTIQTLLSLGADINSKDEKNRSALHLACAGQHLACAKFLLQSG 330          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ANKR7_MACFA (Ankyrin repeat domain-containing protein 7 OS=Macaca fascicularis GN=ANKRD7 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 46/131 (35.11%), Postives = 69/131 (52.67%), Query Frame = 2
Query:  299 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT 691
            RT LH+A + GH +VV  L+   E    +N  D E  +P+  A    N     +LL+ GAD NL++    TALHYA       +VE L+   A + +K+K G T L       N  + + L+E+GA+V+A+
Sbjct:   69 RTPLHLACANGHRDVVLFLI---EQQCKINIRDSENKSPLIKAVQCQNEDCATILLNCGADPNLRDVRYNTALHYAVCGQSFSLVEQLLDYEADLEAKNKDGYTPLLVAVINNNPKMVKFLLEKGADVNAS 196          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: MIB2_MOUSE (E3 ubiquitin-protein ligase MIB2 OS=Mus musculus GN=Mib2 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = 2
Query:  299 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHR--GASTGNSALCELLIE-EGAEVDAT 691
            RT L VAA  G  E+V +LL    S ++    D+EG   +H  A         +LLS G  V+ +N    TALH A  +G+L++V++L  RG  +N  D    T LH    A  G S++ E+L E  G +V AT
Sbjct:  482 RTALQVAAYLGQVELVRLLLQARASMDLP---DDEGNTVLHYTAMGNQPEATRVLLSAGCAVDARNGTRSTALHVAVQRGFLEVVKILCERGCDVNLPDAHADTPLHSAISAGAGASSIVEVLTEVPGIDVTAT 612          

HSP 2 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 51/134 (38.06%), Postives = 70/134 (52.24%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA--ASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKVGCTALHRGASTGNSALCELLIEEG 673
            RN    T LHVA   G  EVV+IL    E    VN  D     P+HSA  A  G  +IVE+L    G DV   N  G T LH+A+ KG +  V  +++R  + +++K + G TALH  A   +  + ++LI EG
Sbjct:  543 RNGTRSTALHVAVQRGFLEVVKILC---ERGCDVNLPDAHADTPLHSAISAGAGASSIVEVLTEVPGIDVTATNSQGFTLLHHASLKGHVLAVRKILARARQLVDAKKEDGFTALHLAALNNHREVAQVLIREG 673          
The following BLAST results are available for this feature:
BLAST of FC920380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
INVS_MOUSE4.367e-1234.59Inversin OS=Mus musculus GN=Invs PE=1 SV=2[more]
CTTB2_FELCA4.367e-1237.30Cortactin-binding protein 2 OS=Felis catus GN=CTTN... [more]
V246_FOWPV5.703e-1238.89Putative ankyrin repeat protein FPV246 OS=Fowlpox ... [more]
UACA_BOVIN5.703e-1238.28Uveal autoantigen with coiled-coil domains and ank... [more]
KDIS_RAT5.703e-1235.29Kinase D-interacting substrate of 220 kDa OS=Rattu... [more]
INVSB_XENLA5.703e-1234.09Inversin-B OS=Xenopus laevis GN=invs-B PE=1 SV=1[more]
GABP2_HUMAN5.703e-1241.05GA-binding protein subunit beta-2 OS=Homo sapiens ... [more]
ANR16_HUMAN5.703e-1236.51Ankyrin repeat domain-containing protein 16 OS=Hom... [more]
ANKR7_MACFA5.703e-1235.11Ankyrin repeat domain-containing protein 7 OS=Maca... [more]
MIB2_MOUSE7.448e-1236.57E3 ubiquitin-protein ligase MIB2 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionC32007F01EF RVDevelop1 Citrus clementina cDNA clone C32007F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920380 ID=FC920380; Name=FC920380; organism=Citrus clementina; type=EST; length=691bp
GGGGAAGGAGTAAAGTGACGAACCGCGCACCGGGTGAGAACCGGACACAA
CCGAACCGCACCATACCATTGCGCACCGCTTTCGACTTGCAACTAGCTCG
CCGCTGGACCAAATCACACCGTCAAAACTCTAATTCTCGGCAAATTGACA
GTACAATTCCGGTATGGACATGGACATCGATCAAACAATCAAGGACAAAG
ACCTCTTCAAAGCCGCCGAAACTGGAGATTCCTCAACATTCAAATCCCTC
TCAAAACAGCAGCTCTTAAAATCTCTCTCCTTGCGGAACGACGACGACCG
CACCCTCCTCCACGTCGCCGCCTCATGTGGTCACCCCGAGGTGGTGGAAA
TATTGTTGAGTGTTGATGAGTCGGCGAATGTAGTAAACGCTGTTGATGAA
GAAGGGTGGGCTCCGATTCATTCTGCGGCTAGCATTGGCAATGTGACAAT
CGTGGAAATGTTGTTAAGCAAAGGAGCTGATGTAAATTTGAAGAATGATG
GTGGGCGAACCGCTCTTCACTATGCTGCCAGCAAGGGATGGTTGAAGATT
GTGGAACTTCTGATCTCACGTGGTGCAAAAATTAACTCCAAGGACAAGGT
TGGTTGCACAGCATTGCACCGGGGAGCTAGTACAGGGAATTCAGCATTGT
GTGAACTCTTAATTGAAGAAGGAGCAGAGGTTGATGCTACT
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