FC920380

Overview
NameFC920380
Unique NameFC920380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: V218_FOWPV (Putative ankyrin repeat protein FPV218 OS=Fowlpox virus GN=FPV218 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 44/152 (28.95%), Postives = 76/152 (50.00%), Query Frame = 2
Query:  287 NDDDRTLLHVAASCGHPEVVEILLSVDESANV-------------------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 685
            ND+  + L +A     P +V +LL  +   ++                   VN +D E  + +H AA   +V  V  L+  GA+VN+++  G + LH+A SK      ++L+  GA++N +D +G   LH GA+T    + +LLI+ G+ +D
Sbjct:   63 NDETVSPLAIAIKVNSPTIVSLLLDYNADTSLFPLYVSFPIIKVLVYHGIDVNVIDRESRSFLHYAAKNDDVDTVISLILHGANVNVQDSKGLSPLHHAVSKKTTLTAKILLENGARVNIRDSLGRLPLHLGANT--YEMVKLLIDYGSPID 212          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: UACA_MOUSE (Uveal autoantigen with coiled-coil domains and ankyrin repeats OS=Mus musculus GN=Uaca PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 46/133 (34.59%), Postives = 66/133 (49.62%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 682
            R+   R  LH+AA  GH   ++ LL  +        VD +G   +H A      + +++L   GA VN K+  GRT L  A       I +LLI RGA +NS+DK   TAL  G   G     E+L++ GA++
Sbjct:   99 RDSAGRNALHLAAKYGHALCLQKLLQYNCPTE---HVDLQGRTALHDAVMADCPSSIQLLCDHGASVNAKDIDGRTPLVLATQMCRPTICQLLIDRGADVNSRDKQNRTALMLGCEYGCRDAVEVLVKNGADL 228          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: NFKB1_RAT (Nuclear factor NF-kappa-B p105 subunit (Fragment) OS=Rattus norvegicus GN=Nfkb1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 42/128 (32.81%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  302 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRG-AKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 679
            ++LH+AA  GH +++ +LL   ++A ++N  + EG   IH A    +++ +++L++ GA+VN +    GRTALH A     + +   L+  G A ++S    G T LH  A  G++ L  LL   GA+
Sbjct:  164 SVLHLAAKEGHDKILGVLLKNSKAALLINHPNGEGLNAIHIAVMSNSLSCLQLLVAAGAEVNAQEQKSGRTALHLAVEYDNISLAGCLLLEGDALVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGAD 291          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: BARD1_MOUSE (BRCA1-associated RING domain protein 1 OS=Mus musculus GN=Bard1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 604
            RN    TLLH+A+  G    VE LL   ++ N  N  D  GW P+H A S G++ +VE+LL   A VN       + LH A   G + IV++L+S GA  N+ +  G
Sbjct:  412 RNHRGETLLHIASIKGDIPSVEYLL---QNGNDPNVKDHAGWTPLHEACSHGHLKVVELLLQHNALVNTPGYQNDSPLHDAVKSGHIDIVKVLLSHGASRNAVNIFG 515          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ZDH17_HUMAN (Palmitoyltransferase ZDHHC17 OS=Homo sapiens GN=ZDHHC17 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = 2
Query:  290 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDKVGC-TALHRGASTGNSALCELLIEEGAEVDA 688
            D + T LH A   GH  +V  L+      +++   D EG + IH AA  G+ +IV  L++KG DV++ +  G T L +AA +   +    LL++    +N  DK    TALH     GN+ +  LL+E GA VDA
Sbjct:  122 DLNSTPLHWATRQGHLSMVVQLMKYGADPSLI---DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA 253          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: YR007_HUMAN (Putative ankyrin repeat domain-containing protein ENSP00000330211 OS=Homo sapiens PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 42/132 (31.82%), Postives = 66/132 (50.00%), Query Frame = 2
Query:  293 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            ++RT L  A  C       IL+      N+V      G   +H A +  N+++V  LLS GAD+ LKN  G T L  A  K   +IVE L+++ A   + DK  CTAL      G+S +  +++++  ++ A
Sbjct:   48 ENRTTLMKALQCQREACANILIDSGADPNIVGVY---GNTAVHYAVNSENLSVVAKLLSCGADIELKNKAGHTPLLLAIRKRSEQIVEFLLTKNANAIAVDKFKCTALMLAICHGSSEIVGMVLQQNVDICA 176          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: Y3236_ARATH (Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 46/157 (29.30%), Postives = 75/157 (47.77%), Query Frame = 2
Query:  203 LFKAAETGDSSTFXXXXXXXXXXXXXXRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD-VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK-DKVGCTALHRGASTGNSALCELLIE 667
            LF AA+ G                   +N      LH+AA  GH  +VE+LL  D  A +          P+ SAA  G+  +V  LLSK  + + +     + ALH AA +G +++++ L+S+  ++  + DK G TALH      +S + +LL++
Sbjct:  133 LFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLL--DHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLD 287          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: V018_FOWPV (Putative ankyrin repeat protein FPV018 OS=Fowlpox virus GN=FPV018 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 34/93 (36.56%), Postives = 54/93 (58.06%), Query Frame = 2
Query:  413 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT 691
            PIH+A SI    +  +L++KGADVN++N  G+T +H A     +  +++LI  GA +N +D  G T L   +  G  +  E L+  GA+V+ T
Sbjct:  399 PIHAAVSINTSRLTRLLINKGADVNVRNRYGKTPIHLACMYSKIGNIKVLIKNGANVNERDNYGITPLMICSREGKVSNMEYLLANGADVNQT 491          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ANR61_MOUSE (Ankyrin repeat domain-containing protein 61 OS=Mus musculus GN=Ankrd61 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 47/144 (32.64%), Postives = 72/144 (50.00%), Query Frame = 2
Query:  287 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK-NDGGRTALHYAASKGWLKI----------VELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 685
            N +  + LH+A   G   V+  L    ++   VNA +E    P+H AA I N  ++E L++ GA+VN   +  G TAL  A      K+          + LL++ GA++N++D  G TALH     G  A+  LL+E  A V+
Sbjct:  164 NSNKHSALHLAIIHGTYPVLSFLA---QNGAQVNATNESSMTPLHMAADILNKNMIETLIAFGANVNCAISSTGNTALKLAVCTASSKVGRLLAAGVGCIRLLLNNGAQVNAQDHEGQTALHEACFGGREAIISLLLEFEANVN 304          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: AKR2_ARATH (Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  365 DESANVVNAVDEEGWAP---IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 682
            D++ +    V EEG      +H  AS+G+V  ++  L+ G + + ++  GRTALH+A   G LK  ++LI  GA +N+ DK   T LH  A  G      LL+E GA V
Sbjct:  202 DQTVSAEPEVAEEGEEEESIVHQTASLGDVEGLKAALASGGNKDEEDSEGRTALHFACGYGELKCAQVLIDAGASVNAVDKNKNTPLHYAAGYGRKECVSLLLENGAAV 310          
The following BLAST results are available for this feature:
BLAST of FC920380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
V218_FOWPV3.697e-1128.95Putative ankyrin repeat protein FPV218 OS=Fowlpox ... [more]
UACA_MOUSE3.697e-1134.59Uveal autoantigen with coiled-coil domains and ank... [more]
NFKB1_RAT3.697e-1132.81Nuclear factor NF-kappa-B p105 subunit (Fragment) ... [more]
BARD1_MOUSE3.697e-1138.32BRCA1-associated RING domain protein 1 OS=Mus musc... [more]
ZDH17_HUMAN4.828e-1135.56Palmitoyltransferase ZDHHC17 OS=Homo sapiens GN=ZD... [more]
YR007_HUMAN4.828e-1131.82Putative ankyrin repeat domain-containing protein ... [more]
Y3236_ARATH4.828e-1129.30Ankyrin repeat-containing protein At3g12360 OS=Ara... [more]
V018_FOWPV4.828e-1136.56Putative ankyrin repeat protein FPV018 OS=Fowlpox ... [more]
ANR61_MOUSE4.828e-1132.64Ankyrin repeat domain-containing protein 61 OS=Mus... [more]
AKR2_ARATH4.828e-1136.70Ankyrin repeat domain-containing protein 2 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC32007F01EF RVDevelop1 Citrus clementina cDNA clone C32007F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920380 ID=FC920380; Name=FC920380; organism=Citrus clementina; type=EST; length=691bp
GGGGAAGGAGTAAAGTGACGAACCGCGCACCGGGTGAGAACCGGACACAA
CCGAACCGCACCATACCATTGCGCACCGCTTTCGACTTGCAACTAGCTCG
CCGCTGGACCAAATCACACCGTCAAAACTCTAATTCTCGGCAAATTGACA
GTACAATTCCGGTATGGACATGGACATCGATCAAACAATCAAGGACAAAG
ACCTCTTCAAAGCCGCCGAAACTGGAGATTCCTCAACATTCAAATCCCTC
TCAAAACAGCAGCTCTTAAAATCTCTCTCCTTGCGGAACGACGACGACCG
CACCCTCCTCCACGTCGCCGCCTCATGTGGTCACCCCGAGGTGGTGGAAA
TATTGTTGAGTGTTGATGAGTCGGCGAATGTAGTAAACGCTGTTGATGAA
GAAGGGTGGGCTCCGATTCATTCTGCGGCTAGCATTGGCAATGTGACAAT
CGTGGAAATGTTGTTAAGCAAAGGAGCTGATGTAAATTTGAAGAATGATG
GTGGGCGAACCGCTCTTCACTATGCTGCCAGCAAGGGATGGTTGAAGATT
GTGGAACTTCTGATCTCACGTGGTGCAAAAATTAACTCCAAGGACAAGGT
TGGTTGCACAGCATTGCACCGGGGAGCTAGTACAGGGAATTCAGCATTGT
GTGAACTCTTAATTGAAGAAGGAGCAGAGGTTGATGCTACT
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