FC920380

Overview
NameFC920380
Unique NameFC920380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2223 contig Ccv1_Contig2223:1278..1968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: NFKB2_HUMAN (Nuclear factor NF-kappa-B p100 subunit OS=Homo sapiens GN=NFKB2 PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 50/166 (30.12%), Postives = 77/166 (46.39%), Query Frame = 2
Query:  203 LFKAAETGDSSTFXXXXXXXXXXXXXXRNDDDRTLLHVAASCGHPEVVEILLSVDESA--NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNL-KNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            L  A  TG +S                R+ D    L + A  G PE++  LL     A   +++  D EG  P+H A    +   +++L+  GA+V   +  GGRTALH A     L +V  L+++  A +N++   G T LH  A  G   L  LL++ GA++ A
Sbjct:  531 LHLAVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGAPELLRALLQSGAPAVPQLLHMPDFEGLYPVHLAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATEMEELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADIHA 696          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: CTTB2_ORNAN (Cortactin-binding protein 2 OS=Ornithorhynchus anatinus GN=CTTNBP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 45/130 (34.62%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  302 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT 691
            T LH AA+ G+  ++ +LL+  E    +N   E+G + ++SAA  G+   V +LL+  A V+  +  G T L  AA++G +K  ELLI+  A IN   + G T L+     GN+   +LL+E G +   T
Sbjct:  700 TRLHQAAAQGNVTLLSVLLN--EEGLDINHACEDGSSALYSAAKNGHTDCVRLLLNANAQVDDADKNGFTPLCSAAAQGHVKCAELLIAYHADINHAAEGGQTPLYLACKNGNNECIKLLLEAGTDRSIT 827          

HSP 2 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 40/128 (31.25%), Postives = 68/128 (53.12%), Query Frame = 2
Query:  290 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 673
            +D  + L+ AA  GH + V +LL+ +     V+  D+ G+ P+ SAA+ G+V   E+L++  AD+N   +GG+T L+ A   G  + ++LL+  G   +     G T +H    +GN     LL+  G
Sbjct:  730 EDGSSALYSAAKNGHTDCVRLLLNANAQ---VDDADKNGFTPLCSAAAQGHVKCAELLIAYHADINHAAEGGQTPLYLACKNGNNECIKLLLEAGTDRSITTSDGWTPVHAAVDSGNVDSLTLLMYYG 854          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: CTTB2_ECHTE (Cortactin-binding protein 2 OS=Echinops telfairi GN=CTTNBP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 44/126 (34.92%), Postives = 70/126 (55.56%), Query Frame = 2
Query:  302 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 679
            TLL  AA+ G+  ++ +LL+  E    +N   E+G + ++SAA  G+   V +LL+  A VN  ++ G T +  AA++G +K VELL++  A IN     G T L+     GN    +LL+E G +
Sbjct:  715 TLLQQAAAQGNVTLLSMLLN--EEGLDINHSCEDGHSALYSAAKNGHTDCVRLLLNAEAQVNAADNDGFTPVCAAAAQGHVKCVELLVAYHANINHAAAEGQTPLYLACKNGNKECIKLLLEAGTD 838          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ANR54_BOVIN (Ankyrin repeat domain-containing protein 54 OS=Bos taurus GN=ANKRD54 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  416 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            +  +A+  +V  V+ LL +G D    +D GRTALH+A+  G  +IV+LL+  GA  N +D +G T LH  A T ++ +   L+  GA VDA
Sbjct:  113 LRDSANANDVETVQQLLEEGTDPCAADDKGRTALHFASCNGNDQIVQLLLDHGADPNQRDGLGNTPLHLAACTNHAPVITTLLRGGARVDA 203          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ANR26_HUMAN (Ankyrin repeat domain-containing protein 26 OS=Homo sapiens GN=ANKRD26 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 47/135 (34.81%), Postives = 65/135 (48.15%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            R+  +RT LH+A + GHPEVV +L  VD    + N  D E    +  A          +LL  GAD NL +  G TALHYA     + +   L+   A I +K+K   T L    S     + E LI++ A V+A
Sbjct:   76 RDKMNRTALHLACANGHPEVVTLL--VDRKCQL-NVCDNENRTALMKAVQCQEEKCATILLEHGADPNLADVHGNTALHYAVYNEDISVATKLLLYDANIEAKNKDDLTPLLLAVSGKKQQMVEFLIKKKANVNA 207          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ANKR1_RAT (Ankyrin repeat domain-containing protein 1 OS=Rattus norvegicus GN=Ankrd1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 43/116 (37.07%), Postives = 67/116 (57.76%), Query Frame = 2
Query:  341 VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            VVE  LS   S +V    DE     +H A   G++ IVE L+  GA +  ++    TA+H+A   G L +++LL+++GAKI+++DK+  TALH    TG+    E LI   A+++A
Sbjct:  135 VVEKFLSDKNSPDVC---DEYKRTALHRACLEGHLAIVEKLMEAGAQIEFRDMLESTAIHWACRGGNLDVLKLLLNKGAKISARDKLLSTALHVAVRTGHYECAEHLIACEADLNA 247          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ANKR1_RABIT (Ankyrin repeat domain-containing protein 1 OS=Oryctolagus cuniculus GN=ANKRD1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 42/116 (36.21%), Postives = 68/116 (58.62%), Query Frame = 2
Query:  341 VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            VVE  LS   + +V    DE     +H A   G++ IVE L+  GA +  ++    TA+H+A   G L++++LL+++GAKI+++DK+  TALH    TG+    E LI   A+++A
Sbjct:  135 VVEKFLSDQNNPDVC---DEYKRTALHRACLEGHLAIVEKLMEAGAQIEFRDMLESTAIHWACRGGNLEVLKLLLNKGAKISARDKLLSTALHVAVRTGHYECAEHLIACEADLNA 247          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: V034_FOWPV (Putative ankyrin repeat protein FPV034 OS=Fowlpox virus GN=ANK2 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 43/130 (33.08%), Postives = 73/130 (56.15%), Query Frame = 2
Query:  302 TLLH-VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 685
            ++LH ++ S  +  V+ +LL      N++N V     APIH A    N+    +L+++ ADVN+K   GGRT+LH A  +   +   +LI+ GA ++S D VG T +   AS  +    +LL++ GA+++
Sbjct:  173 SMLHFLSTSNKYHNVMAVLLDKGIDVNIINHVK----APIHVAVERNNIYGTMLLINRNADVNIKELHGGRTSLHLAIKERNYEAAFVLINNGANVDSFDDVGNTPIFIAASLQDVRFMKLLLDNGADIN 298          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: POTEB_HUMAN (POTE ankyrin domain family member B OS=Homo sapiens GN=POTEB PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 45/135 (33.33%), Postives = 71/135 (52.59%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            R+   RT LH+A++ G+ EVV++LL   +    +N +D +    +  A        V MLL  GAD N++++ G TALHYA       + + L+  GA I SK+K G T L  G       + + LI++ A ++A
Sbjct:  169 RDKQKRTALHLASANGNSEVVQLLL---DRRCQLNVLDNKKRTALIKAVQCQEDECVLMLLEHGADGNIQDEYGNTALHYAIYNEDKLMAKALLLYGADIESKNKCGLTPLLLGVHEQKQQVVKFLIKKKANLNA 300          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: NFKB1_CHICK (Nuclear factor NF-kappa-B p105 subunit OS=Gallus gallus GN=NFKB1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 50/141 (35.46%), Postives = 76/141 (53.90%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK---GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGASTGNSALCELLIEEG-AEVDAT 691
            RND  +T LH+A      EVVE LL    +   VN +D  G + +H AA+ G+  I+ +LL      + ++L N  G +A+H   +   L  ++LLI+ G  +N+++ K G TALH      N  L   L+ EG A+VD+T
Sbjct:  576 RNDLYQTPLHLAVITKQAEVVEDLLKAGAN---VNLLDRHGNSVLHLAAAEGDDKILSLLLKHQKASSMIDLSNGEGLSAIHMVVTANSLSCLKLLIAAGVDVNAQEQKSGRTALHLAVEQENVPLAGCLLLEGDADVDST 713          
The following BLAST results are available for this feature:
BLAST of FC920380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
NFKB2_HUMAN6.305e-1130.12Nuclear factor NF-kappa-B p100 subunit OS=Homo sap... [more]
CTTB2_ORNAN6.305e-1134.62Cortactin-binding protein 2 OS=Ornithorhynchus ana... [more]
CTTB2_ECHTE6.305e-1134.92Cortactin-binding protein 2 OS=Echinops telfairi G... [more]
ANR54_BOVIN6.305e-1139.56Ankyrin repeat domain-containing protein 54 OS=Bos... [more]
ANR26_HUMAN6.305e-1134.81Ankyrin repeat domain-containing protein 26 OS=Hom... [more]
ANKR1_RAT6.305e-1137.07Ankyrin repeat domain-containing protein 1 OS=Ratt... [more]
ANKR1_RABIT6.305e-1136.21Ankyrin repeat domain-containing protein 1 OS=Oryc... [more]
V034_FOWPV8.235e-1133.08Putative ankyrin repeat protein FPV034 OS=Fowlpox ... [more]
POTEB_HUMAN8.235e-1133.33POTE ankyrin domain family member B OS=Homo sapien... [more]
NFKB1_CHICK8.235e-1135.46Nuclear factor NF-kappa-B p105 subunit OS=Gallus g... [more]

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Properties
Property NameValue
Genbank descriptionC32007F01EF RVDevelop1 Citrus clementina cDNA clone C32007F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920380 ID=FC920380; Name=FC920380; organism=Citrus clementina; type=EST; length=691bp
GGGGAAGGAGTAAAGTGACGAACCGCGCACCGGGTGAGAACCGGACACAA
CCGAACCGCACCATACCATTGCGCACCGCTTTCGACTTGCAACTAGCTCG
CCGCTGGACCAAATCACACCGTCAAAACTCTAATTCTCGGCAAATTGACA
GTACAATTCCGGTATGGACATGGACATCGATCAAACAATCAAGGACAAAG
ACCTCTTCAAAGCCGCCGAAACTGGAGATTCCTCAACATTCAAATCCCTC
TCAAAACAGCAGCTCTTAAAATCTCTCTCCTTGCGGAACGACGACGACCG
CACCCTCCTCCACGTCGCCGCCTCATGTGGTCACCCCGAGGTGGTGGAAA
TATTGTTGAGTGTTGATGAGTCGGCGAATGTAGTAAACGCTGTTGATGAA
GAAGGGTGGGCTCCGATTCATTCTGCGGCTAGCATTGGCAATGTGACAAT
CGTGGAAATGTTGTTAAGCAAAGGAGCTGATGTAAATTTGAAGAATGATG
GTGGGCGAACCGCTCTTCACTATGCTGCCAGCAAGGGATGGTTGAAGATT
GTGGAACTTCTGATCTCACGTGGTGCAAAAATTAACTCCAAGGACAAGGT
TGGTTGCACAGCATTGCACCGGGGAGCTAGTACAGGGAATTCAGCATTGT
GTGAACTCTTAATTGAAGAAGGAGCAGAGGTTGATGCTACT
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