FC920387

Overview
NameFC920387
Unique NameFC920387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EF1A_HALSA (Elongation factor 1-alpha OS=Halobacterium salinarium GN=tuf PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.180e-41
Identity = 84/182 (46.15%), Postives = 117/182 (64.29%), Query Frame = 2
Query:   92 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 637
            +  H N+ VIGHVD GKST  G L+Y+ G + + VIE+ ++EA E  K  F++A+V+D L  ERERG+ IDIA  +F T +Y  T++D PGHRDF+KNMITG SQAD AVL++ +  G          QTREH  L+ TLG+ ++I   NKMD     Y +++Y+E+V  V     +VG+ P
Sbjct:    3 DNRHQNLAVIGHVDHGKSTMVGRLLYETGSVPEHVIEQHKEEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFTTDEYEFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDG-------VAPQTREHVFLSRTLGIDELIVAVNKMDVV--DYDESKYNEVVSGVKDLFGQVGFNP 175          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EF1A_HALS3 (Elongation factor 1-alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=tuf PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.180e-41
Identity = 84/182 (46.15%), Postives = 117/182 (64.29%), Query Frame = 2
Query:   92 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 637
            +  H N+ VIGHVD GKST  G L+Y+ G + + VIE+ ++EA E  K  F++A+V+D L  ERERG+ IDIA  +F T +Y  T++D PGHRDF+KNMITG SQAD AVL++ +  G          QTREH  L+ TLG+ ++I   NKMD     Y +++Y+E+V  V     +VG+ P
Sbjct:    3 DNRHQNLAVIGHVDHGKSTMVGRLLYETGSVPEHVIEQHKEEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFTTDEYEFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDG-------VAPQTREHVFLSRTLGIDELIVAVNKMDVV--DYDESKYNEVVSGVKDLFGQVGFNP 175          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: HBS1_SCHPO (Elongation factor 1 alpha-like protein OS=Schizosaccharomyces pombe GN=hbs1 PE=2 SV=4)

HSP 1 Score: 164.851 bits (416), Expect = 3.563e-40
Identity = 85/189 (44.97%), Postives = 119/189 (62.96%), Query Frame = 2
Query:   95 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL-KKVGYTPRKSHSCP 658
            K  +++VV GHVDSGKST  G ++++LG I+ R +++   EAA   K SF YAW+LD  + ER RG+ +D+A   FE+ K    + DAPGHRDFI  MI G S AD AVL++DS+   FE G  ++GQTREHA L   LG+ +++   NK+D  +  +S+ R+ EI   VS +L K VG+     H  P
Sbjct:  175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVP 361          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EF1A_HALMA (Elongation factor 1-alpha OS=Haloarcula marismortui GN=tuf PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.037e-39
Identity = 83/189 (43.92%), Postives = 118/189 (62.43%), Query Frame = 2
Query:   92 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCP 658
            ++ H N+ +IGHVD GKST  G L+Y+ G + + VIE+ ++EA E  K  F++A+V+D L  ERERG+ IDIA  +F T  Y  T++D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  LA TLG+ ++I   NKMD     Y ++ Y ++V+EV   L +V +    +   P
Sbjct:    3 DEQHQNLAIIGHVDHGKSTLVGRLLYETGSVPEHVIEQHKEEAEEKGKGGFEFAYVMDNLAEERERGVTIDIAHQEFSTDTYDFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDG-------VQPQTQEHVFLARTLGIGELIVAVNKMDLV--DYGESEYKQVVEEVKDLLTQVRFDSENAKFIP 182          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EF1A_METST (Elongation factor 1-alpha OS=Methanosphaera stadtmanae (strain DSM 3091) GN=tuf PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.531e-39
Identity = 85/185 (45.95%), Postives = 116/185 (62.70%), Query Frame = 2
Query:   83 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 637
            M KEKTH+N+  IGHVD GKST  GHL+   G I ++ ++  E           K+ +V+DKL  ERERG+ ID+A  KFET KY  TV+D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMD     YS+ +++E+ +E+ + +  VG+ P
Sbjct:    1 MAKEKTHMNLAFIGHVDHGKSTLVGHLLLLEGAIAEQQLDEGED----------KFRFVMDKLGEERERGVTIDLAHAKFETQKYEYTVVDCPGHRDFVKNMITGASQADAAVLVVAANDGIMP-------QTKEHIFLSRTLGINQLIIAINKMDVV--DYSEDKFNELKEELGALISTVGFKP 166          

HSP 2 Score: 24.2534 bits (51), Expect = 1.531e-39
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 1
Query:  634 PEKVPFVPISGFE 672
            P  VPF+P+S FE
Sbjct:  166 PSDVPFIPVSAFE 178          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.994e-39
Identity = 85/185 (45.95%), Postives = 114/185 (61.62%), Query Frame = 2
Query:   83 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 637
            M K K HIN+  IGHVD GKST  GHL+ K G I ++ ++  E           K+ +V+DKL  ERERG+ ID+A  KF T KY  TV+D PGHRDF+KNMITG SQAD  VL++ +  G          QT+EH  L+ TLG+ Q+I   NK+D     Y +A+++E+  EVS+ +K VG+ P
Sbjct:    1 MAKTKEHINLAFIGHVDHGKSTLVGHLLLKAGAIAEQQLDDGEN----------KFRFVMDKLGEERERGVTIDLAHQKFSTKKYDYTVVDCPGHRDFVKNMITGASQADAGVLVVAADDGVMP-------QTKEHVFLSKTLGINQLIVAINKIDLV--DYDEAKFNELKDEVSALIKTVGFNP 166          

HSP 2 Score: 24.2534 bits (51), Expect = 1.994e-39
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  631 HPEKVPFVPISGFE 672
            +P  VPF+P+S FE
Sbjct:  165 NPADVPFIPVSAFE 178          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EF1A_METKA (Elongation factor 1-alpha OS=Methanopyrus kandleri GN=tuf PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.597e-39
Identity = 84/183 (45.90%), Postives = 113/183 (61.75%), Query Frame = 2
Query:   83 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 631
            M KEK HIN+  IGHVD GKST  G L+Y  G I+ +          ++ +   K+  ++D L+ ERERG+ ID+A  KFET  Y  T++D PGHRDF+KNMITG SQAD A+L++ +  G          QT+EHA LA TLG+ Q+I   NKMD     Y + RY+E+ +EV+  LK +GY
Sbjct:    1 MAKEKEHINLAFIGHVDHGKSTLVGRLLYDTGVIEDK----------DLGEGEDKFRVIMDTLEEERERGVTIDLAHTKFETDNYEFTIVDCPGHRDFVKNMITGASQADAAILVVAADDGVMP-------QTKEHAFLAKTLGIDQLIVAINKMDLV--DYDENRYEEVKQEVAELLKTIGY 164          

HSP 2 Score: 23.0978 bits (48), Expect = 2.597e-39
Identity = 7/12 (58.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  637 EKVPFVPISGFE 672
            +++PF+PIS FE
Sbjct:  167 DEIPFIPISAFE 178          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EF1A_METTH (Elongation factor 1-alpha OS=Methanobacterium thermoautotrophicum GN=tuf PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.689e-38
Identity = 83/185 (44.86%), Postives = 113/185 (61.08%), Query Frame = 2
Query:   83 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 637
            M KEK H+N+  IGHVD GKST  GHL+ + G I ++ +   E           K+ +V+D+L  ERERG+ ID+A  KFET KY  T++D PGHRDF+KNMITG SQAD AVL++    G          QT+EH  L+ TLG+ Q+I   NKMD     Y + +++ +  EV++ +K VGY P
Sbjct:    1 MAKEKEHMNLAFIGHVDHGKSTLVGHLLLQAGAIAEQQLAEGED----------KFRFVMDRLSEERERGVTIDLAHAKFETDKYEFTIVDCPGHRDFVKNMITGASQADAAVLVVAVDDGVMP-------QTKEHVFLSRTLGINQLIVAINKMDLV--NYDEEKFNALKDEVAALIKTVGYKP 166          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EF1A_ENCCU (Elongation factor 1-alpha OS=Encephalitozoon cuniculi GN=TEF1 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.704e-38
Identity = 77/176 (43.75%), Postives = 113/176 (64.20%), Query Frame = 2
Query:   95 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKK 622
            K  +N   IGHVDSGKSTT G L Y+LG +DKR +E++EKEAA  NK +F  A++ DK  AER+RGI I   L    T K+   ++D PGH+DF+KNM+TG SQAD AV+I+ ++  GFE+ +   G  + H +++  LG +++I C NKMD         +++E+  E+   +K+
Sbjct:   44 KPRLNACFIGHVDSGKSTTVGMLSYQLGAVDKREMEKYEKEAALNNKETFYLAYLTDKTDAERKRGITITTTLVNLPTEKFNINILDCPGHKDFVKNMVTGASQADVAVVIVPAS--GFESCVGVGGMLKTHIMISGILGCEKLIVCVNKMDEIPENKRMEKFNEVSAEMLRIVKR 217          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.316e-27
Identity = 58/84 (69.05%), Postives = 66/84 (78.57%), Query Frame = 2
Query:  395 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP-KYSKARYDEIVKEVSSYLKKVGYTPRK 643
            GTSQAD A+L++ +  GGFE   SK+GQTREHALLAFTLGVKQMI   NKMDATTP KYS+ R++EI  EVS YLK VGY P K
Sbjct:    1 GTSQADVALLVVPADQGGFEGAFSKEGQTREHALLAFTLGVKQMIVGINKMDATTPDKYSETRFNEIQAEVSRYLKTVGYNPEK 84          

HSP 2 Score: 30.0314 bits (66), Expect = 1.316e-27
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 1
Query:  631 HPEKVPFVPISGF 669
            +PEKVPFVPISGF
Sbjct:   81 NPEKVPFVPISGF 93          
The following BLAST results are available for this feature:
BLAST of FC920387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_HALSA7.180e-4146.15Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_HALS37.180e-4146.15Elongation factor 1-alpha OS=Halobacterium salinar... [more]
HBS1_SCHPO3.563e-4044.97Elongation factor 1 alpha-like protein OS=Schizosa... [more]
EF1A_HALMA1.037e-3943.92Elongation factor 1-alpha OS=Haloarcula marismortu... [more]
EF1A_METST1.531e-3945.95Elongation factor 1-alpha OS=Methanosphaera stadtm... [more]
EF1A_METS31.994e-3945.95Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_METKA2.597e-3945.90Elongation factor 1-alpha OS=Methanopyrus kandleri... [more]
EF1A_METTH5.689e-3844.86Elongation factor 1-alpha OS=Methanobacterium ther... [more]
EF1A_ENCCU9.704e-3843.75Elongation factor 1-alpha OS=Encephalitozoon cunic... [more]
EF1A_EIMBO1.316e-2769.05Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]

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Properties
Property NameValue
Genbank descriptionC32007F09EF RVDevelop1 Citrus clementina cDNA clone C32007F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920387 ID=FC920387; Name=FC920387; organism=Citrus clementina; type=EST; length=672bp
ACTCTCTCAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATAT
CATTTTAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACT
CACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCAC
CACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCG
AGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATAC
GCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTGCCAT
TGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCA
TTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACC
TCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGGTGGTTT
TGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTG
CTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGAC
GCCACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGA
GGTCTCTTCCTACCTGAAGAAGGTTGGATACACCCCGAGAAAGTCCCATT
CGTGCCCATCTCTGGTTTCGAG
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