FC920387

Overview
NameFC920387
Unique NameFC920387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_FRATW (Sulfate adenylyltransferase subunit 1 OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=cysN PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.125e-20
Identity = 67/189 (35.45%), Postives = 95/189 (50.26%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY---------AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG 628
            ++K  +  +  G VD GKST  G L++     D ++I  FE + A +   S K          A ++D L++ERE+GI ID+A   F T K    + D PGH  + +NM TG S  D A+++ID+  G          QTR H+ +   LG+K +I   NKMD  T  YS+  Y  I  E   YLK  G
Sbjct:   20 QQKELLRFITCGSVDDGKSTLMGRLLH-----DSKLI--FEDQLASIVADSKKVGTQGDRLDLALLVDGLQSEREQGITIDVAYRYFSTDKRKFIIADTPGHEQYTRNMATGASNCDLAIILIDARKG-------LQTQTRRHSFICSLLGIKHVIVAVNKMD--TVGYSQQIYKSIQDE---YLKLAG 189          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_FRATN (Sulfate adenylyltransferase subunit 1 OS=Francisella tularensis subsp. novicida (strain U112) GN=cysN PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.125e-20
Identity = 67/189 (35.45%), Postives = 95/189 (50.26%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY---------AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG 628
            ++K  +  +  G VD GKST  G L++     D ++I  FE + A +   S K          A ++D L++ERE+GI ID+A   F T K    + D PGH  + +NM TG S  D A+++ID+  G          QTR H+ +   LG+K +I   NKMD  T  YS+  Y  I  E   YLK  G
Sbjct:   20 QQKELLRFITCGSVDDGKSTLIGRLLH-----DSKLI--FEDQLASIVADSKKVGTQGDRLDLALLVDGLQSEREQGITIDVAYRYFSTDKRKFIIADTPGHEQYTRNMATGASNCDLAIILIDARKG-------LQTQTRRHSFICSLLGIKHVIVAVNKMD--TVGYSQQIYKSIQDE---YLKLAG 189          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_ARCB4 (Sulfate adenylyltransferase subunit 1 OS=Arcobacter butzleri (strain RM4018) GN=cysN PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.125e-20
Identity = 60/180 (33.33%), Postives = 95/180 (52.78%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMN--KRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSS-YLK 619
            + K  +  +  G VD GKST  G L++    I +  +   +K++ ++   +  F  A ++D L++ERE+GI ID+A   F T K    + D PGH  + +NM TG S AD A+++ID+  G          QTR H+ +   LG+K ++   NKMD    K      ++I  ++SS YLK
Sbjct:   20 ENKQLLRFITCGSVDDGKSTLIGRLLHDSKMIFEDQLAAIKKDSKKVGTTEGEFDLALLVDGLQSEREQGITIDVAYRYFTTDKRKFIIADTPGHEQYTRNMATGASTADLAIILIDARYG-------VQTQTRRHSFITKLLGIKHIVVAVNKMDLVDFK------EDIFNQISSDYLK 186          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_RICBR (Elongation factor Tu OS=Rickettsia bellii (strain RML369-C) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 55/155 (35.48%), Postives = 85/155 (54.84%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK++ T  +   LG  +K + ++++++               +D    E+ERGI I  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV +M+   NK+D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITMVLGKDNKDIKVKKYDE---------------IDAAPEEKERGITISTAHVEYETKSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPKMVVFLNKVD 140          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_RICB8 (Elongation factor Tu OS=Rickettsia bellii (strain OSU 85-389) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 55/155 (35.48%), Postives = 85/155 (54.84%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK++ T  +   LG  +K + ++++++               +D    E+ERGI I  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV +M+   NK+D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITMVLGKDNKDIKVKKYDE---------------IDAAPEEKERGITISTAHVEYETKSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPKMVVFLNKVD 140          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_NOVAD (Elongation factor Tu OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 58/154 (37.66%), Postives = 78/154 (50.65%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H NI  IGHVD GK+T T  +                K  AE     F     +DK   ERERGI I  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++++  G          QTREH LLA  +GV  ++   NK+D
Sbjct:    8 RNKPHCNIGTIGHVDHGKTTLTAAIT---------------KVLAEQGGAEFTDYANIDKAPEERERGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMP-------QTREHILLARQVGVPALVVYMNKVD 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_MYCPE (Elongation factor Tu OS=Mycoplasma penetrans GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 63/182 (34.62%), Postives = 93/182 (51.10%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGY 631
            + K H+NI  IGH+D GK+T T  +   L              A +   ++ KY  + DK   E+ RGI I+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ ++ G          QTREH LLA  +GV +M+   NK D      S A   ++V+ EV   L   G+
Sbjct:    8 RSKAHVNIGTIGHIDHGKTTLTAAICTYL--------------AKKGGAKAMKYDEI-DKAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAASDGPMP-------QTREHILLARQVGVPKMVVFLNKCDMV----SDAEMQDLVEMEVRELLSSYGF 163          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_MYCGI (Elongation factor Tu OS=Mycobacterium gilvum (strain PYR-GCK) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 59/155 (38.06%), Postives = 86/155 (55.48%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T  +   L             +  ++N+ R+F     +D    ER+RGI I+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITKVL-----------HDQYPDLNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKAD 141          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_MYCAP (Elongation factor Tu OS=Mycoplasma agalactiae (strain PG2) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 61/181 (33.70%), Postives = 90/181 (49.72%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 631
            + K H+NI  IGHVD GK+T T  +   L               A+      K    +D    E+ RGI I+ +  ++ T K +   +D PGH D+IKNMITG +Q D ++L++ +T G          QT+EH LLA  +GV +M+   NK D   P+ ++   D +  EV   L K G+
Sbjct:    8 RSKEHVNIGTIGHVDHGKTTLTAAIATVL---------------AKKGLSEAKSYDAIDNAPEEKARGITINTSHIEYNTEKRHYAHVDCPGHADYIKNMITGAAQMDGSILVVAATDGAMP-------QTKEHVLLAKQVGVPKMVVFLNKCDMIKPEDAE-MIDLVEMEVRELLTKYGF 165          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_DESDG (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain G20) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 62/161 (38.51%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   83 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            MGKEK      H+NI  IGH+D GK+T T   I K+  +             +M  ++  Y  + DK   E+ERGI I  A  ++ETT  +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    1 MGKEKFERTKPHVNIGTIGHIDHGKTTLTA-AITKIASL-------------KMGSKAVAYDEI-DKAPEEKERGITIATAHVEYETTLRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGPMP-------QTREHILLARQVGVPSIVVFLNKCD 139          
The following BLAST results are available for this feature:
BLAST of FC920387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYSN_FRATW9.125e-2035.45Sulfate adenylyltransferase subunit 1 OS=Francisel... [more]
CYSN_FRATN9.125e-2035.45Sulfate adenylyltransferase subunit 1 OS=Francisel... [more]
CYSN_ARCB49.125e-2033.33Sulfate adenylyltransferase subunit 1 OS=Arcobacte... [more]
EFTU_RICBR1.192e-1935.48Elongation factor Tu OS=Rickettsia bellii (strain ... [more]
EFTU_RICB81.192e-1935.48Elongation factor Tu OS=Rickettsia bellii (strain ... [more]
EFTU_NOVAD1.192e-1937.66Elongation factor Tu OS=Novosphingobium aromaticiv... [more]
EFTU_MYCPE1.192e-1934.62Elongation factor Tu OS=Mycoplasma penetrans GN=tu... [more]
EFTU_MYCGI1.192e-1938.06Elongation factor Tu OS=Mycobacterium gilvum (stra... [more]
EFTU_MYCAP1.192e-1933.70Elongation factor Tu OS=Mycoplasma agalactiae (str... [more]
EFTU_DESDG1.192e-1938.51Elongation factor Tu OS=Desulfovibrio desulfurican... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32007F09EF RVDevelop1 Citrus clementina cDNA clone C32007F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920387 ID=FC920387; Name=FC920387; organism=Citrus clementina; type=EST; length=672bp
ACTCTCTCAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATAT
CATTTTAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACT
CACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCAC
CACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCG
AGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATAC
GCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTGCCAT
TGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCA
TTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACC
TCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGGTGGTTT
TGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTG
CTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGAC
GCCACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGA
GGTCTCTTCCTACCTGAAGAAGGTTGGATACACCCCGAGAAAGTCCCATT
CGTGCCCATCTCTGGTTTCGAG
back to top