FC920387

Overview
NameFC920387
Unique NameFC920387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_DESAH (Elongation factor Tu OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 59/154 (38.31%), Postives = 78/154 (50.65%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGH+D GK+T T  +                K AA      F     +DK   ERERGI I  A  ++ET K +   +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTAAIT---------------KHAALRGFGKFVAFDEIDKAPEERERGITISTAHVEYETAKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSADDGPMP-------QTREHILLARQVGVPSIVVFLNKCD 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_CHLMU (Elongation factor Tu OS=Chlamydia muridarum GN=tuf PE=3 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 60/181 (33.15%), Postives = 92/181 (50.83%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 631
            + K HINI  IGHVD GK+T T  +   L G                    F+    +D    E+ RGI I+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D  + + ++   D +  E+S  L++ GY
Sbjct:    8 RNKPHINIGTIGHVDHGKTTLTAAITRALSGD---------------GLADFRDYSSIDNTPEEKARGITINASHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGAMP-------QTKEHILLARQVGVPYIVVFLNKIDMISEEDAEL-VDLVEMELSELLEEKGY 165          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_BRELN (Elongation factor Tu OS=Brevibacterium linens GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 58/155 (37.42%), Postives = 89/155 (57.42%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T         I K + +++     ++N+ R+F     +D    E+ERGI I+++  +++T K +   +DAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLADQYP----DLNEARAFDQ---VDNAPEEKERGITINVSHVEYQTEKRHYAHVDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYIVVALNKSD 141          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_BIFLO (Elongation factor Tu OS=Bifidobacterium longum GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 59/154 (38.31%), Postives = 81/154 (52.60%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T         I K + E F     E +         +D    E  RGI I+IA  +++T K +   +D PGH DF+KNMITG +Q D A+L++ +T G          QTREH LLA  +GV +++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AISKVLHEEFPDVNPEYDFNQ------IDSAPEEAARGITINIAHIEYQTEKRHYAHVDCPGHADFVKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLARQVGVPKILVALNKCD 141          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_BIFLI (Elongation factor Tu OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 59/154 (38.31%), Postives = 81/154 (52.60%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T         I K + E F     E +         +D    E  RGI I+IA  +++T K +   +D PGH DF+KNMITG +Q D A+L++ +T G          QTREH LLA  +GV +++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AISKVLHEEFPDVNPEYDFNQ------IDSAPEEAARGITINIAHIEYQTEKRHYAHVDCPGHADFVKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLARQVGVPKILVALNKCD 141          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_BIFLD (Elongation factor Tu OS=Bifidobacterium longum (strain DJO10A) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 59/154 (38.31%), Postives = 81/154 (52.60%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T         I K + E F     E +         +D    E  RGI I+IA  +++T K +   +D PGH DF+KNMITG +Q D A+L++ +T G          QTREH LLA  +GV +++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AISKVLHEEFPDVNPEYDFNQ------IDSAPEEAARGITINIAHIEYQTEKRHYAHVDCPGHADFVKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLARQVGVPKILVALNKCD 141          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_ANAVT (Elongation factor Tu OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T  +   L  + + V + +++               +D    E+ RGI I+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV +++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITMTLAALGQAVAKGYDQ---------------IDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLAKQVGVPKLVVFLNKED 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_ANASP (Elongation factor Tu OS=Anabaena sp. (strain PCC 7120) GN=tuf PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T  +   L  + + V + +++               +D    E+ RGI I+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV +++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITMTLAALGQAVAKGYDQ---------------IDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLAKQVGVPKLVVFLNKED 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_ACAM1 (Elongation factor Tu OS=Acaryochloris marina (strain MBIC 11017) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 55/154 (35.71%), Postives = 79/154 (51.30%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T  +   L  + +    +++                +D    ERERGI I+ A  ++ET   +   +D PGH D++KNMITG +Q D AVL++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITMSLAALGQAKARKYDD---------------IDAAPEERERGITINTAHVEYETQDRHYAHVDCPGHADYVKNMITGAAQMDGAVLVVSAADGPMP-------QTREHILLAKQVGVPNIVVFMNKQD 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTUB_NICSY (Elongation factor TuB, chloroplastic OS=Nicotiana sylvestris GN=TUFB PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 54/154 (35.06%), Postives = 79/154 (51.30%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            ++K H+NI  IGHVD GK+T T  L   L  +     +++++               +D    ER RGI I+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++    G          QT+EH LLA  +GV  M+   NK D
Sbjct:   84 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDE---------------IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHILLAKQVGVPNMVVFLNKQD 215          
The following BLAST results are available for this feature:
BLAST of FC920387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_DESAH1.192e-1938.31Elongation factor Tu OS=Desulfobacterium autotroph... [more]
EFTU_CHLMU1.192e-1933.15Elongation factor Tu OS=Chlamydia muridarum GN=tuf... [more]
EFTU_BRELN1.192e-1937.42Elongation factor Tu OS=Brevibacterium linens GN=t... [more]
EFTU_BIFLO1.192e-1938.31Elongation factor Tu OS=Bifidobacterium longum GN=... [more]
EFTU_BIFLI1.192e-1938.31Elongation factor Tu OS=Bifidobacterium longum sub... [more]
EFTU_BIFLD1.192e-1938.31Elongation factor Tu OS=Bifidobacterium longum (st... [more]
EFTU_ANAVT1.192e-1935.06Elongation factor Tu OS=Anabaena variabilis (strai... [more]
EFTU_ANASP1.192e-1935.06Elongation factor Tu OS=Anabaena sp. (strain PCC 7... [more]
EFTU_ACAM11.192e-1935.71Elongation factor Tu OS=Acaryochloris marina (stra... [more]
EFTUB_NICSY1.192e-1935.06Elongation factor TuB, chloroplastic OS=Nicotiana ... [more]

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Properties
Property NameValue
Genbank descriptionC32007F09EF RVDevelop1 Citrus clementina cDNA clone C32007F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920387 ID=FC920387; Name=FC920387; organism=Citrus clementina; type=EST; length=672bp
ACTCTCTCAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATAT
CATTTTAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACT
CACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCAC
CACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCG
AGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATAC
GCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTGCCAT
TGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCA
TTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACC
TCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGGTGGTTT
TGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTG
CTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGAC
GCCACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGA
GGTCTCTTCCTACCTGAAGAAGGTTGGATACACCCCGAGAAAGTCCCATT
CGTGCCCATCTCTGGTTTCGAG
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