FC920387

Overview
NameFC920387
Unique NameFC920387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_LARHH (Sulfate adenylyltransferase subunit 1 OS=Laribacter hongkongensis (strain HLHK9) GN=cysN PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 62/184 (33.70%), Postives = 97/184 (52.72%), Query Frame = 2
Query:   95 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY---------AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLK 619
            K  +  +  G VD GKST  G L++     D R+I  FE + A + + S K+         A ++D L+AERE+GI ID+A   F T      + D PGH  + +NM TG S AD A+++ID+  G          QTR H+ +A  LG++ +I   NKMD    ++ +A ++ I ++  ++ K
Sbjct:   22 KDLLRFITCGSVDDGKSTLIGRLLH-----DSRLI--FEDQLAAIERDSQKHNTTDEAVDLALLVDGLQAEREQGITIDVAYRYFSTDTRKFIIADCPGHEQYTRNMATGASTADLAIILIDARYG-------VQTQTRRHSFIASLLGIRHVIVAVNKMDLL--EFDQAVFERIRQDYLTFAK 189          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_ESCF3 (Sulfate adenylyltransferase subunit 1 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=cysN PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.192e-19
Identity = 57/181 (31.49%), Postives = 94/181 (51.93%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKV 625
            + K+ +  +  G VD GKST  G L++    I +  +     ++     +  K   A ++D L+AERE+GI ID+A   F T K    + D PGH  + +NM TG S  D A+L+ID+  G  +       QTR H+ ++  LG+K +I   NKMD     YS+  +  I ++  ++ +++
Sbjct:   23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD-------QTRRHSFISTLLGIKHLIVAINKMDLV--DYSEETFTRIREDYLTFAEQL 194          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_PROMT (Elongation factor Tu OS=Prochlorococcus marinus (strain NATL2A) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.556e-19
Identity = 57/154 (37.01%), Postives = 83/154 (53.90%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T         I K + ++ + EA +  +        +D    ERERGI I+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTA-------AITKVLAKKGQAEAQDYAE--------IDGAPEERERGITINTAHVEYETEGRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGAM-------AQTKEHILLAKQVGVPALVVALNKCD 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_PROM1 (Elongation factor Tu OS=Prochlorococcus marinus (strain NATL1A) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.556e-19
Identity = 57/154 (37.01%), Postives = 83/154 (53.90%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T         I K + ++ + EA +  +        +D    ERERGI I+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTA-------AITKVLAKKGQAEAQDYAE--------IDGAPEERERGITINTAHVEYETDGRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGAM-------AQTKEHILLAKQVGVPALVVALNKCD 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_PELUB (Elongation factor Tu OS=Pelagibacter ubique GN=tuf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.556e-19
Identity = 58/180 (32.22%), Postives = 89/180 (49.44%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG 628
            + K H NI  IGHVD GK+T T  +   L  +       +++               +DK   E+ERGI I  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++++  G          QTREH LL   +G+  ++   NK+D    K      +E ++E+ +  K  G
Sbjct:    8 RNKPHCNIGTIGHVDHGKTTLTAAITITLAELGGGKAVAYDQ---------------IDKAPEEKERGITISTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMP-------QTREHILLGRQVGIPAIVVYLNKVDQVDDKDMIELVEEEIRELLTSYKYPG 165          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_NEOSM (Elongation factor Tu OS=Neorickettsia sennetsu (strain Miyayama) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.556e-19
Identity = 56/155 (36.13%), Postives = 83/155 (53.55%), Query Frame = 2
Query:   92 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 556
            ++ H+NI  IGHVD GK+T T              I +F  E     +  F+    +DK   ER+RGI I  A  +++T + +   +D PGH D+IKNMITG +Q D A+L++  T G  +       QT+EH LLA  +GV  ++   NK D++
Sbjct:   12 DRPHLNIGTIGHVDHGKTTLTA------------AITKFCSEEGGGYEADFRAYDNIDKAPEERQRGITISTAHVEYKTPERHYAHVDCPGHADYIKNMITGAAQMDGAILVVAGTDGAMQ-------QTKEHILLAKQVGVGSIVVYINKCDSS 147          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_MYCGE (Elongation factor Tu OS=Mycoplasma genitalium GN=tuf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.556e-19
Identity = 59/181 (32.60%), Postives = 92/181 (50.83%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 631
            + K H+N+  IGH+D GK+T T  +   L    K    R+++               +DK   E+ RGI I+ A  ++ + K +   +D PGH D+IKNMITG +Q D A+L++ +T        S   QTREH LLA  +GV +M+   NK D  + +  +   + + +EV   L   G+
Sbjct:    8 RSKPHVNVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYDE---------------IDKAPEEKARGITINSAHVEYSSDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATD-------SVMPQTREHILLARQVGVPKMVVFLNKCDIASDEEVQ---ELVAEEVRDLLTSYGF 163          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_LACPL (Elongation factor Tu OS=Lactobacillus plantarum GN=tuf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.556e-19
Identity = 62/156 (39.74%), Postives = 84/156 (53.85%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLG--GIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T  +   L   G+ K      E++ A            +D    ERERGI I+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITKVLASKGLAK------EQDFAS-----------IDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVDYIVVFLNKTD 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_LACH4 (Elongation factor Tu OS=Lactobacillus helveticus (strain DPC 4571) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.556e-19
Identity = 61/154 (39.61%), Postives = 82/154 (53.25%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T  +   L           EK  A+    S      +D    E+ERGI I+ A  ++ET K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    9 RTKPHVNIGTIGHVDHGKTTLTAAITTVLA----------EKGLAKAEDYS-----QIDAAPEEKERGITINTAHVEYETEKRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVNYIVVFLNKCD 140          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_LACCB (Elongation factor Tu OS=Lactobacillus casei (strain BL23) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.556e-19
Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T         I K + E+   +A +       YA + D    E+ERGI I+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    9 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLSEKGLAKAQD-------YASI-DAAPEEKERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVDYIVVFLNKTD 140          
The following BLAST results are available for this feature:
BLAST of FC920387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYSN_LARHH1.192e-1933.70Sulfate adenylyltransferase subunit 1 OS=Laribacte... [more]
CYSN_ESCF31.192e-1931.49Sulfate adenylyltransferase subunit 1 OS=Escherich... [more]
EFTU_PROMT1.556e-1937.01Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PROM11.556e-1937.01Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PELUB1.556e-1932.22Elongation factor Tu OS=Pelagibacter ubique GN=tuf... [more]
EFTU_NEOSM1.556e-1936.13Elongation factor Tu OS=Neorickettsia sennetsu (st... [more]
EFTU_MYCGE1.556e-1932.60Elongation factor Tu OS=Mycoplasma genitalium GN=t... [more]
EFTU_LACPL1.556e-1939.74Elongation factor Tu OS=Lactobacillus plantarum GN... [more]
EFTU_LACH41.556e-1939.61Elongation factor Tu OS=Lactobacillus helveticus (... [more]
EFTU_LACCB1.556e-1940.26Elongation factor Tu OS=Lactobacillus casei (strai... [more]

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Properties
Property NameValue
Genbank descriptionC32007F09EF RVDevelop1 Citrus clementina cDNA clone C32007F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920387 ID=FC920387; Name=FC920387; organism=Citrus clementina; type=EST; length=672bp
ACTCTCTCAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATAT
CATTTTAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACT
CACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCAC
CACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCG
AGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATAC
GCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTGCCAT
TGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCA
TTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACC
TCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGGTGGTTT
TGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTG
CTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGAC
GCCACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGA
GGTCTCTTCCTACCTGAAGAAGGTTGGATACACCCCGAGAAAGTCCCATT
CGTGCCCATCTCTGGTTTCGAG
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