FC920387

Overview
NameFC920387
Unique NameFC920387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:131..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_THEEB (Elongation factor Tu OS=Thermosynechococcus elongatus (strain BP-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 53/154 (34.42%), Postives = 81/154 (52.60%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+N+  IGHVD GK+T T  +   L    K    ++++               +D    E+ RGI I+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAAITMTLAAQGKAQARKYDE---------------IDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGAMP-------QTKEHILLARQVGVPSIVVFLNKVD 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_SYNFM (Elongation factor Tu OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 56/154 (36.36%), Postives = 83/154 (53.90%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+N+  +GH+D GK+T T         I K++ +R   E    ++        +DK   ERERGI I  A  ++ET K +   +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NK+D
Sbjct:    8 RTKPHVNVGTVGHIDHGKTTLTA-------AITKQLAKRGRAEFVPFDQ--------IDKAPEERERGITIATAHVEYETDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAADDGPMP-------QTREHILLSRQVGVPYIVVFLNKVD 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_SOLUE (Elongation factor Tu OS=Solibacter usitatus (strain Ellin6076) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 56/154 (36.36%), Postives = 80/154 (51.95%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGH+D GK+T T  +   L              A    K  F+    +D    E+ RGI I +A  ++ET K +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK+D
Sbjct:    8 RSKPHVNIGTIGHIDHGKTTLTAAITKVL--------------AKHNPKNKFRSFDSIDNAPEEKARGITIAVAHVEYETAKRHYAHVDCPGHADYIKNMITGAAQMDGAIVVVAATDGPMP-------QTREHILLARQVGVPYIVVAMNKVD 140          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_PICGU (Elongation factor Tu, mitochondrial OS=Pichia guilliermondii GN=TUF1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 56/154 (36.36%), Postives = 81/154 (52.60%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T  +                K  +E    +F     +D+   ER RGI I  A  +++T K +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV+ ++   NK+D
Sbjct:   32 RSKPHVNIGTIGHVDHGKTTLTAAIT---------------KVLSEKGGANFLDYGSIDRAPEERARGITISTAHVEYQTDKRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGQMP-------QTREHLLLARQVGVQHLVVFVNKVD 163          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_LACF3 (Elongation factor Tu OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 58/154 (37.66%), Postives = 80/154 (51.95%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T  +   L        E +                 +D    E+ERGI I+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV+ ++   NK D
Sbjct:    9 RTKPHVNIGTIGHVDHGKTTLTAAITKVLAAKGLAKAEDYSD---------------IDAAPEEKERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVEYIVVFLNKTD 140          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_GEOSL (Elongation factor Tu OS=Geobacter sulfurreducens GN=tuf1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 57/154 (37.01%), Postives = 79/154 (51.30%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T  +                K  AE  +  F+    +D    ERERGI I  +  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAIT---------------KVLAERGQAEFRGFDQIDNAPEERERGITIATSHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKAD 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_EUBE2 (Elongation factor Tu OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 60/154 (38.96%), Postives = 79/154 (51.30%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H NI  IGHVD GK+T T         I K + ER     A   +        +DK   ERERGI I  A  ++ET K +   +D PGH D++KNMITG +Q D  +L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHCNIGTIGHVDHGKTTLTA-------AITKTLHERLGTGEAVAFEN-------IDKAPEERERGITISTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDAGILVVAATDGVM-------AQTREHILLARQVGVPYIVVFMNKCD 140          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_DEIGD (Elongation factor Tu OS=Deinococcus geothermalis (strain DSM 11300) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 56/154 (36.36%), Postives = 82/154 (53.25%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+N+  IGHVD GK+T T  + +    +D  V    EK A +           +DK   E+ RGI I+ A  ++ T   + + +D PGH D++KNMITG +Q D A+L++ S  G          QTREH LLA  +GV  ++   NK+D
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAAITFTAAAMDPTV----EKLAYDQ----------IDKAPEEKARGITINTAHVEYNTPARHYSHVDCPGHADYVKNMITGAAQMDGAILVVSSADGPMP-------QTREHILLARQVGVPYIVVFMNKVD 140          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_CLOK5 (Elongation factor Tu OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 55/154 (35.71%), Postives = 81/154 (52.60%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T  +   L    K    ++++               +DK   E+ERGI I+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITMVLAKEGKASATKYDE---------------IDKAPEEKERGITINTAHVEYETEVRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKSD 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_CLOD6 (Elongation factor Tu OS=Clostridium difficile (strain 630) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 59/155 (38.06%), Postives = 82/155 (52.90%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEK-EAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T         I K + +R++  EA +           +DK   ERERGI I  A  ++ET   +   +D PGH D++KNMITG +Q D A+L+  +T G          QTREH LL+  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKTLYDRYQLGEAVDFAN--------IDKAPEERERGITISTAHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSATDGPMP-------QTREHILLSRQVGVPYIVVFLNKCD 140          
The following BLAST results are available for this feature:
BLAST of FC920387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_THEEB2.033e-1934.42Elongation factor Tu OS=Thermosynechococcus elonga... [more]
EFTU_SYNFM2.033e-1936.36Elongation factor Tu OS=Syntrophobacter fumaroxida... [more]
EFTU_SOLUE2.033e-1936.36Elongation factor Tu OS=Solibacter usitatus (strai... [more]
EFTU_PICGU2.033e-1936.36Elongation factor Tu, mitochondrial OS=Pichia guil... [more]
EFTU_LACF32.033e-1937.66Elongation factor Tu OS=Lactobacillus fermentum (s... [more]
EFTU_GEOSL2.033e-1937.01Elongation factor Tu OS=Geobacter sulfurreducens G... [more]
EFTU_EUBE22.033e-1938.96Elongation factor Tu OS=Eubacterium eligens (strai... [more]
EFTU_DEIGD2.033e-1936.36Elongation factor Tu OS=Deinococcus geothermalis (... [more]
EFTU_CLOK52.033e-1935.71Elongation factor Tu OS=Clostridium kluyveri (stra... [more]
EFTU_CLOD62.033e-1938.06Elongation factor Tu OS=Clostridium difficile (str... [more]

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Properties
Property NameValue
Genbank descriptionC32007F09EF RVDevelop1 Citrus clementina cDNA clone C32007F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920387 ID=FC920387; Name=FC920387; organism=Citrus clementina; type=EST; length=672bp
ACTCTCTCAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATAT
CATTTTAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACT
CACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCAC
CACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCG
AGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATAC
GCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTGCCAT
TGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCA
TTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACC
TCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGGTGGTTT
TGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTG
CTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGAC
GCCACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGA
GGTCTCTTCCTACCTGAAGAAGGTTGGATACACCCCGAGAAAGTCCCATT
CGTGCCCATCTCTGGTTTCGAG
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