FC920387

Overview
NameFC920387
Unique NameFC920387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_CHLTB (Elongation factor Tu OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 59/181 (32.60%), Postives = 92/181 (50.83%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 631
            + K HINI  IGHVD GK+T T  +   L G                    F+    +D    E+ RGI I+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D  + + ++   D +  E++  L++ GY
Sbjct:    8 RNKPHINIGTIGHVDHGKTTLTAAITRTLSGD---------------GLADFRDYSSIDNTPEEKARGITINASHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGAMP-------QTKEHILLARQVGVPYIVVFLNKIDMISEEDAEL-VDLVEMELAELLEEKGY 165          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_CHLT2 (Elongation factor Tu OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=tuf PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 59/181 (32.60%), Postives = 92/181 (50.83%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 631
            + K HINI  IGHVD GK+T T  +   L G                    F+    +D    E+ RGI I+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D  + + ++   D +  E++  L++ GY
Sbjct:    8 RNKPHINIGTIGHVDHGKTTLTAAITRTLSGD---------------GLADFRDYSSIDNTPEEKARGITINASHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGAMP-------QTKEHILLARQVGVPYIVVFLNKIDMISEEDAEL-VDLVEMELAELLEEKGY 165          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_APPPP (Elongation factor Tu OS=Apple proliferation phytoplasma GN=tuf PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 57/154 (37.01%), Postives = 82/154 (53.25%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            ++K H+N+  IGHVD GK+T T  +   L            K  AE   +S+     +DK K E+ERGI I+     +ET K +   +D PGH D++KNMITG +Q D  +L++ +  G          QTREH LLA  +G+ ++I   NK D
Sbjct:    8 RDKVHVNVGTIGHVDHGKTTLTAAITKILS----------TKGLAE--NKSYDQ---IDKTKEEKERGITINTTHVSYETVKRHYAHVDCPGHADYVKNMITGAAQMDAGILVVSAYHGVMP-------QTREHVLLAGQVGISKLIVFLNKCD 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_ANADE (Elongation factor Tu OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 57/159 (35.85%), Postives = 80/159 (50.31%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 565
            + K H+N+  IGHVD GK+T T  +                K  A+     F     +DK   ERERGI I  A  +++T K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D    K
Sbjct:    8 RSKPHVNVGTIGHVDHGKTTLTAAIT---------------KVLAQKGGAQFLAYDQIDKAPEERERGITIATAHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMVDDK 144          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_FRATT (Sulfate adenylyltransferase subunit 1 OS=Francisella tularensis subsp. tularensis GN=cysN PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 67/189 (35.45%), Postives = 94/189 (49.74%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY---------AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG 628
            ++K  +  +  G VD GKST  G L++     D ++I  FE + A +   S K          A ++D L++ERE+GI ID+A   F T K    + D PGH  + +NM TG S  D A+++ID+  G          QTR H  +   LG+K +I   NKMD  T  YS+  Y  I  E   YLK  G
Sbjct:   20 QQKELLRFITCGSVDDGKSTLIGRLLH-----DSKLI--FEDQLASIVADSKKVGTQGDRLDLALLVDGLQSEREQGITIDVAYRYFSTDKRKFIIADTPGHEQYTRNMATGASNCDLAIILIDARKG-------LQTQTRRHNFICSLLGIKHVIVAVNKMD--TVGYSQQIYKSIQDE---YLKLAG 189          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_FRAT1 (Sulfate adenylyltransferase subunit 1 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=cysN PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 67/189 (35.45%), Postives = 94/189 (49.74%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY---------AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG 628
            ++K  +  +  G VD GKST  G L++     D ++I  FE + A +   S K          A ++D L++ERE+GI ID+A   F T K    + D PGH  + +NM TG S  D A+++ID+  G          QTR H  +   LG+K +I   NKMD  T  YS+  Y  I  E   YLK  G
Sbjct:   20 QQKELLRFITCGSVDDGKSTLIGRLLH-----DSKLI--FEDQLASIVADSKKVGTQGDRLDLALLVDGLQSEREQGITIDVAYRYFSTDKRKFIIADTPGHEQYTRNMATGASNCDLAIILIDARKG-------LQTQTRRHNFICSLLGIKHVIVAVNKMD--TVGYSQQIYKSIQDE---YLKLAG 189          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_ALTMD (Sulfate adenylyltransferase subunit 1 OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=cysN PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 60/179 (33.52%), Postives = 96/179 (53.63%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLK 619
            ++K  +  +  G VD GKST  G L++    I +  +    K++ ++     K   A ++D L++ERE+GI ID+A   F T K    + D PGH  + +NM+TG S  D A++++D+  GG +       QT+ H+ L   LG+K +I   NKMD     YS+  Y +I ++   YLK
Sbjct:   20 EKKDMLRFLTCGSVDDGKSTLIGRLLHDSKMIYEDQLAAITKDSKKVGTTGEKVDLALLVDGLQSEREQGITIDVAYRYFSTDKRKFIIADTPGHEQYTRNMVTGASTCDLAIILVDA-RGGVKV------QTKRHSFLVSLLGIKHVIVAINKMDLM--DYSEEVYKQIQED---YLK 186          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSNC_MYCTU (Bifunctional enzyme cysN/cysC OS=Mycobacterium tuberculosis GN=cysNC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 56/176 (31.82%), Postives = 89/176 (50.57%), Query Frame = 2
Query:   98 THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKV 625
            T + +   G VD GKST  G L+Y    + +      E+ + +        A V D L+AERE+GI ID+A   F T K    + D PGH  + +NM+TG S A   ++++D+  G  E       Q+R HA LA  LG++ ++   NKMD     + + ++D I  E  ++  ++
Sbjct:    3 TLLRLATAGSVDDGKSTLIGRLLYDSKAVMEDQWASVEQTSKDRGHDYTDLALVTDGLRAEREQGITIDVAYRYFATPKRKFIIADTPGHIQYTRNMVTGASTAQLVIVLVDARHGLLE-------QSRRHAFLASLLGIRHLVLAVNKMDLL--GWDQEKFDAIRDEFHAFAARL 169          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_UREU1 (Elongation factor Tu OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 61/181 (33.70%), Postives = 90/181 (49.72%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 631
            + K H+NI  IGHVD GK+T T  +   L    + + + +                 +DK   ERERGI I+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L+I ++ G          QT+EH LLA  +GV +++   NK D  T        D +  EV   L K G+
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAISTVLAKKGQAIAQSYAD---------------VDKTPEERERGITINASHVEYETKTRHYAHVDCPGHADYVKNMITGAAQMDGAILVIAASDGVM-------AQTKEHILLARQVGVPKIVVFLNKCDFMT---DPDMQDLVEMEVRELLTKYGF 163          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_THEAB (Elongation factor Tu OS=Thermosipho africanus (strain TCF52B) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 57/154 (37.01%), Postives = 80/154 (51.95%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+N+  IGH+D GK+T T  +   L    +     +E+               +DK   E+ERGI I+I+  ++ET   +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK D
Sbjct:    8 RSKPHLNVGTIGHIDHGKTTLTAAITKYLSFFGRADYTPYEQ---------------IDKAPEEKERGITINISHIEYETETRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVNVPAMIVFINKTD 139          
The following BLAST results are available for this feature:
BLAST of FC920387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CHLTB2.033e-1932.60Elongation factor Tu OS=Chlamydia trachomatis (str... [more]
EFTU_CHLT22.033e-1932.60Elongation factor Tu OS=Chlamydia trachomatis (str... [more]
EFTU_APPPP2.033e-1937.01Elongation factor Tu OS=Apple proliferation phytop... [more]
EFTU_ANADE2.033e-1935.85Elongation factor Tu OS=Anaeromyxobacter dehalogen... [more]
CYSN_FRATT2.033e-1935.45Sulfate adenylyltransferase subunit 1 OS=Francisel... [more]
CYSN_FRAT12.033e-1935.45Sulfate adenylyltransferase subunit 1 OS=Francisel... [more]
CYSN_ALTMD2.033e-1933.52Sulfate adenylyltransferase subunit 1 OS=Alteromon... [more]
CYSNC_MYCTU2.033e-1931.82Bifunctional enzyme cysN/cysC OS=Mycobacterium tub... [more]
EFTU_UREU12.655e-1933.70Elongation factor Tu OS=Ureaplasma urealyticum ser... [more]
EFTU_THEAB2.655e-1937.01Elongation factor Tu OS=Thermosipho africanus (str... [more]

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Properties
Property NameValue
Genbank descriptionC32007F09EF RVDevelop1 Citrus clementina cDNA clone C32007F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920387 ID=FC920387; Name=FC920387; organism=Citrus clementina; type=EST; length=672bp
ACTCTCTCAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATAT
CATTTTAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACT
CACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCAC
CACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCG
AGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATAC
GCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTGCCAT
TGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCA
TTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACC
TCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGGTGGTTT
TGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTG
CTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGAC
GCCACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGA
GGTCTCTTCCTACCTGAAGAAGGTTGGATACACCCCGAGAAAGTCCCATT
CGTGCCCATCTCTGGTTTCGAG
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