FC920387

Overview
NameFC920387
Unique NameFC920387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_RHOSR (Elongation factor Tu OS=Rhodococcus sp. (strain RHA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 63/181 (34.81%), Postives = 96/181 (53.04%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFE--KEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKV 625
            + K H+NI  IGHVD GK+T T         I K + + +    EA+  ++        +DK   E+ RGI I+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           DEI++ V   ++++
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDAYPDLNEASAFDE--------IDKAPEEKARGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADMVDD-------DEIIELVEMEVREL 159          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_RHOOB (Elongation factor Tu OS=Rhodococcus opacus (strain B4) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 63/181 (34.81%), Postives = 96/181 (53.04%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFE--KEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKV 625
            + K H+NI  IGHVD GK+T T         I K + + +    EA+  ++        +DK   E+ RGI I+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           DEI++ V   ++++
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDAYPDLNEASAFDE--------IDKAPEEKARGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADMVDD-------DEIIELVEMEVREL 159          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_PHYMT (Elongation factor Tu OS=Phytoplasma mali (strain AT) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 57/154 (37.01%), Postives = 82/154 (53.25%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            ++K H+N+  IGHVD GK+T T  +   L            K  AE   +S+     +DK K E+ERGI I+     +ET K +   +D PGH D++KNMITG +Q D  +L++ +  G          QTREH LLA  +G+ ++I   NK D
Sbjct:    8 RDKVHVNVGTIGHVDHGKTTLTAAITKILS----------TKGLAE--NKSYDQ---IDKTKEEKERGITINTTHVSYETEKRHYAHVDCPGHADYVKNMITGAAQMDAGILVVSAYHGVMP-------QTREHVLLAGQVGISKLIVFLNKCD 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_NITSB (Elongation factor Tu OS=Nitratiruptor sp. (strain SB155-2) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 61/154 (39.61%), Postives = 81/154 (52.60%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            K K H+NI  IGHVD GK+T T  +   L           EK  AE  KR +     +D    ERERGI I  +  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 KTKPHVNIGTIGHVDHGKTTLTAAITAVLA----------EKGYAE--KRDYDQ---IDNAPEERERGITIATSHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKED 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_LACGA (Elongation factor Tu OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=tuf PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 58/154 (37.66%), Postives = 81/154 (52.60%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T  +   L        E + +               +D    E+ERGI I+ A  ++ET   +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GVK ++   NK+D
Sbjct:    9 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAEDGLAQAEDYSQ---------------IDAAPEEKERGITINTAHVEYETKNRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVKYIVVFLNKVD 140          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_KINRD (Elongation factor Tu OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 58/154 (37.66%), Postives = 85/154 (55.19%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGH+D GK+T T         I + + ++F     E+NK S      +DK   ER+RGI I IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH +LA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTA-------AITRVLHDKFP----ELNKASAFDQ--IDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVILARQVGVPYIVVALNKAD 141          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_DESRM (Elongation factor Tu OS=Desulfotomaculum reducens (strain MI-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 57/172 (33.14%), Postives = 86/172 (50.00%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEV 604
            + K H+NI  IGHVD GK+T T  +   L       ++R+++               +D    ERERGI I+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NK D    +      D  V+E+
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITVVLSTSGGASVKRYDE---------------IDNAPEERERGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLSRQVGVPYIVVFLNKSDMVDDEELLELVDMEVREL 157          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_CHICK (Elongation factor Tu, mitochondrial (Fragment) OS=Gallus gallus GN=TUFM PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 61/187 (32.62%), Postives = 94/187 (50.27%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYTPRKS 646
            +++ H+N+  IGHVD GK+T T  +   L        +R+E                +DK   ER RGI I+ A  ++ T + +    D PGH D++KNMITGT+  D  +L++ +T G          QTREH LLA  +GV+ ++   NK DA     S A    +V+ E+   L ++GY   ++
Sbjct:   43 RDRPHVNVGTIGHVDHGKTTLTAAITKVLSESGGARFQRYED---------------IDKAPEERARGITINAAHVEYSTARRHYAHTDCPGHADYVKNMITGTAPLDGCILVVAATDGQMP-------QTREHLLLARQVGVRHVVVYVNKADAV----SDAELLPLVELELRELLAEMGYDAERT 203          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_BIFAA (Elongation factor Tu OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 58/154 (37.66%), Postives = 81/154 (52.60%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T         I K + E +     E +         +D    E  RGI I+IA  +++T K +   +D PGH DF+KNMITG +Q D A+L++ +T G          QTREH LLA  +GV +++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AISKVLHEEYPDVNPEYDFNQ------IDSAPEEAARGITINIAHIEYQTEKRHYAHVDCPGHADFVKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLARQVGVPKILVALNKCD 141          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_BIFA0 (Elongation factor Tu OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 57/154 (37.01%), Postives = 83/154 (53.90%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T         I K + + +     E +         +D    E++RGI I+IA  +++T K +   +D PGH DF+KNMITG +Q D A+L++ +T G          QTREH LLA  +GV +++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AISKVLHDEYPDLNPEYDFNQ------IDAAPEEQQRGITINIAHIEYQTAKRHYAHVDCPGHADFVKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLAPQVGVPKILVALNKCD 141          
The following BLAST results are available for this feature:
BLAST of FC920387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_RHOSR2.655e-1934.81Elongation factor Tu OS=Rhodococcus sp. (strain RH... [more]
EFTU_RHOOB2.655e-1934.81Elongation factor Tu OS=Rhodococcus opacus (strain... [more]
EFTU_PHYMT2.655e-1937.01Elongation factor Tu OS=Phytoplasma mali (strain A... [more]
EFTU_NITSB2.655e-1939.61Elongation factor Tu OS=Nitratiruptor sp. (strain ... [more]
EFTU_LACGA2.655e-1937.66Elongation factor Tu OS=Lactobacillus gasseri (str... [more]
EFTU_KINRD2.655e-1937.66Elongation factor Tu OS=Kineococcus radiotolerans ... [more]
EFTU_DESRM2.655e-1933.14Elongation factor Tu OS=Desulfotomaculum reducens ... [more]
EFTU_CHICK2.655e-1932.62Elongation factor Tu, mitochondrial (Fragment) OS=... [more]
EFTU_BIFAA2.655e-1937.66Elongation factor Tu OS=Bifidobacterium adolescent... [more]
EFTU_BIFA02.655e-1937.01Elongation factor Tu OS=Bifidobacterium animalis s... [more]

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Properties
Property NameValue
Genbank descriptionC32007F09EF RVDevelop1 Citrus clementina cDNA clone C32007F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920387 ID=FC920387; Name=FC920387; organism=Citrus clementina; type=EST; length=672bp
ACTCTCTCAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATAT
CATTTTAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACT
CACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCAC
CACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCG
AGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATAC
GCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTGCCAT
TGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCA
TTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACC
TCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGGTGGTTT
TGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTG
CTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGAC
GCCACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGA
GGTCTCTTCCTACCTGAAGAAGGTTGGATACACCCCGAGAAAGTCCCATT
CGTGCCCATCTCTGGTTTCGAG
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