FC920387

Overview
NameFC920387
Unique NameFC920387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:131..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU2_SOYBN (Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFB1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 53/154 (34.42%), Postives = 79/154 (51.30%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            ++K H+NI  IGHVD GK+T T  L   L  +     +++++               +D    ER RGI I+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++    G          QT+EH LLA  +GV  ++   NK D
Sbjct:   78 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDE---------------IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHILLAKQVGVPNIVVFLNKQD 209          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_SULNB (Sulfate adenylyltransferase subunit 1 OS=Sulfurovum sp. (strain NBC37-1) GN=cysN PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 59/175 (33.71%), Postives = 91/175 (52.00%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSF-------KYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEI 592
            + K  +  +  G VD GKST  G ++Y     D ++I   +  AAE   R +         A ++D L++ERE+GI ID+A   F T K    + D PGH  + +NM+TG S AD A+++ID+  G          QTR H+ +   LG++ +I   NKMD     +S+  +D+I
Sbjct:   20 ENKDMLRFLTCGSVDDGKSTLIGRMLY-----DSKMIFDDQLSAAEGESRKYGTTGEKLDMALLVDGLQSEREQGITIDVAYRFFATEKRKFIIADTPGHEQYTRNMVTGASTADVAIILIDARKGILT-------QTRRHSFIVNLLGIEHVIVAINKMDLV--DFSEEVFDKI 180          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_PHOLL (Sulfate adenylyltransferase subunit 1 OS=Photorhabdus luminescens subsp. laumondii GN=cysN PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 58/185 (31.35%), Postives = 96/185 (51.89%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 637
            +EK  +  +  G VD GKST  G L++    I +  +   + ++  +  +  K   A ++D L AERE+GI ID+A   F T K    + D PGH  + +NM TG S  D ++L+ID+  G  E       QTR H+ ++  LG++ ++   NKMD    +Y +  +++I ++   Y+   G  P
Sbjct:   28 QEKGLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSTLQNDSKRIGTQGEKLDLALLVDGLAAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLSILLIDARKGVQE-------QTRRHSFISTLLGIRHLVVAVNKMDLM--EYRQEVFNQIKQD---YMNFAGQLP 200          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_TOBAC (Elongation factor Tu, chloroplastic OS=Nicotiana tabacum GN=TUFA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 54/154 (35.06%), Postives = 78/154 (50.65%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            ++K H+NI  IGHVD GK+T T  L   L  +     +++++               +D    ER RGI I+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L+     G          QT+EH LLA  +GV  M+   NK D
Sbjct:   77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDE---------------IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSGADGPMP-------QTKEHILLAKQVGVPNMVVFLNKQD 208          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_RECAM (Elongation factor Tu, mitochondrial OS=Reclinomonas americana GN=TUFA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 55/154 (35.71%), Postives = 80/154 (51.95%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H NI  IGHVD GK+T T  +   L      V   +++               +DK   E++RGI I  +  ++ETTK +   ID PGH D++KNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NK+D
Sbjct:    8 RTKPHCNIGTIGHVDHGKTTLTAAITKVLSETGGAVFTDYDQ---------------IDKAPEEKKRGITISTSHVEYETTKRHYAHIDCPGHEDYVKNMITGAAQMDGAILVVSAVDGPMP-------QTREHILLSRQVGVPSLVVFLNKVD 139          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_MYCPU (Elongation factor Tu OS=Mycoplasma pulmonis GN=tuf PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 64/186 (34.41%), Postives = 94/186 (50.54%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKS 646
            + K H+NI  IGHVD GK+T T  +   L           +K  AE       YA + D    E+ RGI I+ A  ++ET K +   +D PGH D++KNMITG +Q D  +L++ +T G          QTREH LL+  +GV +M+   NK+D    +       E+  E+ S L + G+   K+
Sbjct:    8 RSKEHVNIGTIGHVDHGKTTLTAAIATVLS----------KKGLAEAKD----YASI-DAAPEEKARGITINTAHIEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMP-------QTREHILLSKQVGVPKMVVFLNKVDMLEGEDEMIELVEL--EIRSLLSEYGFDGDKT 169          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_CYTH3 (Elongation factor Tu OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 61/182 (33.52%), Postives = 91/182 (50.00%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYT 634
            + K H+N+  IGHVD GK+T T  +   L   DK + E          KR F     +D    E+ERGI I+ +  ++ T   +   +D PGH D++KNM+TG +Q D A+L++ +T G          QTREH LLA  +GV  M+   NK+D           +  ++E+ S+    G T
Sbjct:    8 RSKPHVNVGTIGHVDHGKTTLTAAITKVLA--DKGLAE----------KRDFSQ---IDNAPEEKERGITINTSHVEYATATRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVPAMVVFMNKVDLVDDPELLELVEMEIRELLSFYNFPGDT 167          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU_CYAME (Elongation factor Tu, chloroplastic OS=Cyanidioschyzon merolae GN=tufA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 56/155 (36.13%), Postives = 82/155 (52.90%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGHVD GK+T T  +   L   D  V +++FE+               +D    ER RGI I+ +  +++T K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAISAVLASKDNTVQLKKFEE---------------IDSAPEERARGITINTSHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPSIVVFLNKAD 140          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTUA_NICSY (Elongation factor TuA, chloroplastic OS=Nicotiana sylvestris GN=TUFA PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 54/154 (35.06%), Postives = 78/154 (50.65%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            ++K H+NI  IGHVD GK+T T  L   L  +     +++++               +D    ER RGI I+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L+     G          QT+EH LLA  +GV  M+   NK D
Sbjct:   77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDE---------------IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSGADGPMP-------QTKEHILLAKQVGVPNMVVFLNKQD 208          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: EFTU2_STRRA (Elongation factor Tu-2 OS=Streptomyces ramocissimus GN=tuf2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 58/154 (37.66%), Postives = 82/154 (53.25%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 550
            + K H+NI  IGH+D GK+T T         I K + +RF       +   F     +DK   ER+RGI I IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTA-------AITKVLHDRFP------DLNPFTPFDQIDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKTD 141          
The following BLAST results are available for this feature:
BLAST of FC920387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU2_SOYBN2.655e-1934.42Elongation factor Tu, chloroplastic OS=Glycine max... [more]
CYSN_SULNB2.655e-1933.71Sulfate adenylyltransferase subunit 1 OS=Sulfurovu... [more]
CYSN_PHOLL2.655e-1931.35Sulfate adenylyltransferase subunit 1 OS=Photorhab... [more]
EFTU_TOBAC3.467e-1935.06Elongation factor Tu, chloroplastic OS=Nicotiana t... [more]
EFTU_RECAM3.467e-1935.71Elongation factor Tu, mitochondrial OS=Reclinomona... [more]
EFTU_MYCPU3.467e-1934.41Elongation factor Tu OS=Mycoplasma pulmonis GN=tuf... [more]
EFTU_CYTH33.467e-1933.52Elongation factor Tu OS=Cytophaga hutchinsonii (st... [more]
EFTU_CYAME3.467e-1936.13Elongation factor Tu, chloroplastic OS=Cyanidiosch... [more]
EFTUA_NICSY3.467e-1935.06Elongation factor TuA, chloroplastic OS=Nicotiana ... [more]
EFTU2_STRRA3.467e-1937.66Elongation factor Tu-2 OS=Streptomyces ramocissimu... [more]

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Properties
Property NameValue
Genbank descriptionC32007F09EF RVDevelop1 Citrus clementina cDNA clone C32007F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920387 ID=FC920387; Name=FC920387; organism=Citrus clementina; type=EST; length=672bp
ACTCTCTCAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATAT
CATTTTAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACT
CACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCAC
CACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCG
AGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATAC
GCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTGCCAT
TGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCA
TTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACC
TCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGGTGGTTT
TGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTG
CTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGAC
GCCACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGA
GGTCTCTTCCTACCTGAAGAAGGTTGGATACACCCCGAGAAAGTCCCATT
CGTGCCCATCTCTGGTTTCGAG
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