FC920387

Overview
NameFC920387
Unique NameFC920387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_SHISS (Sulfate adenylyltransferase subunit 1 OS=Shigella sonnei (strain Ss046) GN=cysN PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 59/185 (31.89%), Postives = 93/185 (50.27%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 637
            + K+ +  +  G VD GKST  G L++    I +  +     ++     +  K   A ++D L+AERE+GI ID+A   F T K    + D PGH  + +NM TG S  + A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD     YS+  +  I ++   YL   G  P
Sbjct:   23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLV--DYSEETFTRIRED---YLTFAGQLP 195          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_SHIFL (Sulfate adenylyltransferase subunit 1 OS=Shigella flexneri GN=cysN PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 59/185 (31.89%), Postives = 93/185 (50.27%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 637
            + K+ +  +  G VD GKST  G L++    I +  +     ++     +  K   A ++D L+AERE+GI ID+A   F T K    + D PGH  + +NM TG S  + A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD     YS+  +  I ++   YL   G  P
Sbjct:   23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLV--DYSEETFTRIRED---YLTFAGQLP 195          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_SHIF8 (Sulfate adenylyltransferase subunit 1 OS=Shigella flexneri serotype 5b (strain 8401) GN=cysN PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 59/185 (31.89%), Postives = 93/185 (50.27%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 637
            + K+ +  +  G VD GKST  G L++    I +  +     ++     +  K   A ++D L+AERE+GI ID+A   F T K    + D PGH  + +NM TG S  + A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD     YS+  +  I ++   YL   G  P
Sbjct:   23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLV--DYSEETFTRIRED---YLTFAGQLP 195          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_SHIBS (Sulfate adenylyltransferase subunit 1 OS=Shigella boydii serotype 4 (strain Sb227) GN=cysN PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 59/185 (31.89%), Postives = 93/185 (50.27%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 637
            + K+ +  +  G VD GKST  G L++    I +  +     ++     +  K   A ++D L+AERE+GI ID+A   F T K    + D PGH  + +NM TG S  + A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD     YS+  +  I ++   YL   G  P
Sbjct:   23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLV--DYSEETFTHIRED---YLTFAGQLP 195          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_SHIB3 (Sulfate adenylyltransferase subunit 1 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=cysN PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 59/185 (31.89%), Postives = 93/185 (50.27%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 637
            + K+ +  +  G VD GKST  G L++    I +  +     ++     +  K   A ++D L+AERE+GI ID+A   F T K    + D PGH  + +NM TG S  + A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD     YS+  +  I ++   YL   G  P
Sbjct:   23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLV--DYSEETFTRIRED---YLTFAGQLP 195          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_SHEON (Sulfate adenylyltransferase subunit 1 OS=Shewanella oneidensis GN=cysN PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 56/182 (30.77%), Postives = 93/182 (51.10%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK--RSFKYAWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG 628
            + K  +  +  G VD GKST  G L++    I +  +   + ++A+M     +   A ++D L+AERE+GI ID+A   F + K    + D PGH  + +NM TG S  D AV+++D+  G          QT+ HA +A  LG++  +   NKMD     + +  ++ I  + S ++K  G
Sbjct:   18 QHKGLLRFLTCGSVDDGKSTLIGRLLHDSAQIYEDQLASLKNDSAKMGTTGEAIDLALLVDGLQAEREQGITIDVAYRYFSSDKRKFIIADTPGHEQYTRNMATGASTCDLAVILVDARYG-------VQTQTKRHAFIASLLGIRHFVVAINKMDLL--GFDEQVFNRIRNDFSEFVKGFG 190          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_ENTS8 (Sulfate adenylyltransferase subunit 1 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=cysN PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 58/185 (31.35%), Postives = 94/185 (50.81%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 637
            + K+ +  +  G VD GKST  G L++    I +  +     ++     +  K   A ++D L+AERE+GI ID+A   F T K    + D PGH  + +NM TG S  D A+L++D+  G  +       QTR H+ ++  LG+K ++   NKMD     +S+  ++ I ++   YL   G  P
Sbjct:   23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLMDARKGVLD-------QTRRHSFISTLLGIKHLVVAVNKMDLV--DFSEETFERIRQD---YLTFAGQLP 195          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_ECOUT (Sulfate adenylyltransferase subunit 1 OS=Escherichia coli (strain UTI89 / UPEC) GN=cysN PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 59/185 (31.89%), Postives = 93/185 (50.27%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 637
            + K+ +  +  G VD GKST  G L++    I +  +     ++     +  K   A ++D L+AERE+GI ID+A   F T K    + D PGH  + +NM TG S  + A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD     YS+  +  I ++   YL   G  P
Sbjct:   23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLV--DYSEETFTRIRED---YLTFAGQLP 195          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_ECOSM (Sulfate adenylyltransferase subunit 1 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=cysN PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 59/185 (31.89%), Postives = 93/185 (50.27%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 637
            + K+ +  +  G VD GKST  G L++    I +  +     ++     +  K   A ++D L+AERE+GI ID+A   F T K    + D PGH  + +NM TG S  + A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD     YS+  +  I ++   YL   G  P
Sbjct:   23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLV--DYSEETFTRIRED---YLTFAGQLP 195          
BLAST of FC920387 vs. ExPASy Swiss-Prot
Match: CYSN_ECOLI (Sulfate adenylyltransferase subunit 1 OS=Escherichia coli (strain K12) GN=cysN PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 59/185 (31.89%), Postives = 93/185 (50.27%), Query Frame = 2
Query:   89 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGIAIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 637
            + K+ +  +  G VD GKST  G L++    I +  +     ++     +  K   A ++D L+AERE+GI ID+A   F T K    + D PGH  + +NM TG S  + A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD     YS+  +  I ++   YL   G  P
Sbjct:   23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLV--DYSEETFTRIRED---YLTFAGQLP 195          
The following BLAST results are available for this feature:
BLAST of FC920387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYSN_SHISS3.467e-1931.89Sulfate adenylyltransferase subunit 1 OS=Shigella ... [more]
CYSN_SHIFL3.467e-1931.89Sulfate adenylyltransferase subunit 1 OS=Shigella ... [more]
CYSN_SHIF83.467e-1931.89Sulfate adenylyltransferase subunit 1 OS=Shigella ... [more]
CYSN_SHIBS3.467e-1931.89Sulfate adenylyltransferase subunit 1 OS=Shigella ... [more]
CYSN_SHIB33.467e-1931.89Sulfate adenylyltransferase subunit 1 OS=Shigella ... [more]
CYSN_SHEON3.467e-1930.77Sulfate adenylyltransferase subunit 1 OS=Shewanell... [more]
CYSN_ENTS83.467e-1931.35Sulfate adenylyltransferase subunit 1 OS=Enterobac... [more]
CYSN_ECOUT3.467e-1931.89Sulfate adenylyltransferase subunit 1 OS=Escherich... [more]
CYSN_ECOSM3.467e-1931.89Sulfate adenylyltransferase subunit 1 OS=Escherich... [more]
CYSN_ECOLI3.467e-1931.89Sulfate adenylyltransferase subunit 1 OS=Escherich... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32007F09EF RVDevelop1 Citrus clementina cDNA clone C32007F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920387 ID=FC920387; Name=FC920387; organism=Citrus clementina; type=EST; length=672bp
ACTCTCTCAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGAATAT
CATTTTAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAAGACT
CACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCAC
CACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCG
AGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATAC
GCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTGCCAT
TGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCA
TTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACC
TCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGGTGGTTT
TGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTG
CTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGAC
GCCACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGA
GGTCTCTTCCTACCTGAAGAAGGTTGGATACACCCCGAGAAAGTCCCATT
CGTGCCCATCTCTGGTTTCGAG
back to top