FC920395 | Citrus Genome Database

Overview


Name	FC920395
Unique Name	FC920395
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	495

Libraries


Library Name	Type
RVDevelop1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig14132	contig	Ccv1_Contig14132:1..495.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC920395 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.060e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 3

Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 128.257 bits (321), Expect = 1.921e-29
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = 3

Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 494
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66

[Close]

BLAST of FC920395 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.996e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 127.872 bits (320), Expect = 2.509e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 3

Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 494
            MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66

[Close]

BLAST of FC920395 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.996e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 127.872 bits (320), Expect = 2.509e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 3

Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 494
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66

[Close]

BLAST of FC920395 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.219e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 3

Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 127.487 bits (319), Expect = 3.277e-29
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = 3

Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 494
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

[Close]

BLAST of FC920395 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.219e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 3

Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 127.487 bits (319), Expect = 3.277e-29
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = 3

Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 494
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

[Close]

BLAST of FC920395 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.817e-35
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 3

Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 127.102 bits (318), Expect = 4.280e-29
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 3

Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 494
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66

[Close]

BLAST of FC920395 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.817e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 127.102 bits (318), Expect = 4.280e-29
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 3

Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 494
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

[Close]

BLAST of FC920395 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.903e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 126.716 bits (317), Expect = 5.589e-29
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 3

Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 494
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

[Close]

BLAST of FC920395 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.903e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 126.716 bits (317), Expect = 5.589e-29
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 3

Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 494
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

[Close]

BLAST of FC920395 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.903e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 126.716 bits (317), Expect = 5.589e-29
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 3

Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 494
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

The following BLAST results are available for this feature:

BLAST of FC920395 vs. ExPASy Swiss-Prot

BLAST of FC920395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97


Match Name	E-value	Identity	Description
UBIQ_ACECL	3.060e-35	96.05	Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1	[more]
UBIQ_TRYCR	3.996e-35	97.37	Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1	[more]
UBIQ_ACACA	3.996e-35	97.37	Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1	[more]
UBIQ_GEOCY	5.219e-35	96.05	Ubiquitin OS=Geodia cydonium PE=3 SV=1	[more]
UBIQ_CAEEL	5.219e-35	96.05	Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ...	[more]
UBIQ_EUPEU	6.817e-35	96.05	Ubiquitin OS=Euplotes eurystomus PE=3 SV=1	[more]
UBIQ_AGLNE	6.817e-35	96.05	Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1	[more]
UBIQ_XENLA	8.903e-35	96.05	Ubiquitin OS=Xenopus laevis PE=1 SV=1	[more]
UBIQ_SPOFR	8.903e-35	96.05	Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1	[more]
UBIQ_RAT	8.903e-35	96.05	Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C32007G06EF RVDevelop1 Citrus clementina cDNA clone C32007G06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC920395 ID=FC920395; Name=FC920395; organism=Citrus clementina; type=EST; length=495bp
GCTCACAGTTTCTCAGATAATCTTCACCTTCAATTTGATTAAGGCCTTCT
TTGAATCTCTTTGTCAAGATGCAAATCTTTGTGAAGACTCTCACTGGAAA
AACCATAACCCTTGAGGTTGAAAGCTCCGATACCATTGATAATGTCAAAG
CTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGCTTATC
TTTGCTGGTAAACAGCTTGAGGATGGGCGCACACTCGCCGATTATAACAT
CCAGAAGGAGTCGACCCTGCACTTGGTTCTTCGTCTTAGGGGTGGCATGC
AAATCTTTGTAAAGACCCTCACTGGAAAGACCATTACCCTTGAGGTGGAA
AGCTCGGACACCATTGACAATGTCAAAGCCAAAATTCAGGATAAGGAAGG
GATCCCACCAGACCAGCAAAGGCTCATCTTTGCTGGCAAACAACTTGAGG
ATGGACGCACACTTGCNGACTACAACATCCAGAAGGAATCAACCC