FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLOTE (Phosphoglycerate kinase OS=Clostridium tetani GN=pgk PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.478e-46
Identity = 99/182 (54.40%), Postives = 130/182 (71.43%), Query Frame = 3 
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKY--SLKPLVPRLSELLGVEVKMA--NDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +++ D+KG++V VR D NVPL D   ITD+NR+  A+PTIKY+M  G KVIL SHLG+PKG  PK   SL P+  RLSELL  EV     N+ +GE  +K V  + +G V+LL+N R+ KEE KN+  F+K+LASLAD++VNDAFG+AHRAH ST GV +F+  SV G+L+ KEL +L  AV
Sbjct:   11 IEDIDVKGRKVLVRCDFNVPLKDG-KITDENRLMGALPTIKYIMEKGGKVILCSHLGKPKG-EPKQELSLAPVAKRLSELLNKEVLFPADNEVVGENAKKAVENMKDGDVILLQNTRYRKEETKNEETFSKELASLADIFVNDAFGTAHRAHCSTVGVTEFVATSVCGYLIQKELKFLGNAV 190
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_LEPBL (Phosphoglycerate kinase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=pgk PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.211e-46
Identity = 94/172 (54.65%), Postives = 128/172 (74.42%), Query Frame = 3 
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKEL 638
            L+  DL GKRVF+RVD NVP++ N  +TD  R+   +PTI+ L+  GA++I++SHLGRPKG T P++SL P+V     L+   V  +   IG+E  K+  E+ +G +L++ENVRFHKEEE+N+P F+KKLA+LAD+YVNDAFG+AHRAHASTEG+A  L P+ AG LM KE+
Sbjct:    6 LENVDLSGKRVFLRVDFNVPIE-NGKVTDKTRIEKTLPTIELLIKKGARIIIASHLGRPKGQTNPEFSLAPVVEVFKGLVKSNVYFSKTVIGDEPIKLSKELRDGEILVIENVRFHKEEEENEPGFSKKLAALADVYVNDAFGAAHRAHASTEGIAHLL-PAYAGLLMHKEI 175
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_LEPBJ (Phosphoglycerate kinase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=pgk PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.211e-46
Identity = 94/172 (54.65%), Postives = 128/172 (74.42%), Query Frame = 3 
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKEL 638
            L+  DL GKRVF+RVD NVP++ N  +TD  R+   +PTI+ L+  GA++I++SHLGRPKG T P++SL P+V     L+   V  +   IG+E  K+  E+ +G +L++ENVRFHKEEE+N+P F+KKLA+LAD+YVNDAFG+AHRAHASTEG+A  L P+ AG LM KE+
Sbjct:    6 LENVDLSGKRVFLRVDFNVPIE-NGKVTDKTRIEKTLPTIELLIKKGARIIIASHLGRPKGQTNPEFSLAPVVEVFKGLVKSNVYFSKTVIGDEPIKLSKELRDGEILVIENVRFHKEEEENEPGFSKKLAALADVYVNDAFGAAHRAHASTEGIAHLL-PAYAGLLMHKEI 175
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PENCI (Phosphoglycerate kinase OS=Penicillium citrinum GN=PGKA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.417e-46
Identity = 100/193 (51.81%), Postives = 128/193 (66.32%), Query Frame = 3 
Query:  132 EADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPE---------------FAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            + DLKGKRV +RVD NVPLD+N N+T+  R+  A+PTIKY + +GAK V+L SHLGRP G V PKYSLKP+VP L +LLG  V  A DC+G + E+ V +  +G V+LLEN+RFH EEE +  +               F K L +L D+YVNDAFG+AHRAH+S  GV   L    AGFL+ KEL+Y   A+
Sbjct:   11 DVDLKGKRVLIRVDFNVPLDENKNVTNPQRIVGALPTIKYAIDNGAKAVVLMSHLGRPDGKVNPKYSLKPVVPVLEKLLGKSVTFAEDCVGPQTEETVNKASDGQVILLENLRFHAEEEGSSKDAEGKKVKADKADVDAFRKGLTALGDVYVNDAFGTAHRAHSSMVGVD--LPQKAAGFLVKKELEYFAKAL 201
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLOK5 (Phosphoglycerate kinase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=pgk PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.417e-46
Identity = 97/181 (53.59%), Postives = 129/181 (71.27%), Query Frame = 3 
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMAND--CIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +++ D+KGKRV VR D NVPL +   ITD+NR+  ++PTIKYLM + AKVIL SHLG+PKG V P+ SL P+  RLSELL  EV  A D   +GE  +  V  + +G V+LL+N R+  EE KN   F+K+LASL +++VNDAFG+AHRAH ST GV KFL  +V G+L+ KEL++L  A+
Sbjct:    8 IEDVDVKGKRVLVRCDFNVPLQEG-KITDENRLIGSLPTIKYLMENNAKVILCSHLGKPKGEVKPEMSLLPVAKRLSELLKKEVVFAADDNVVGENAKAAVKNMKDGDVILLQNTRYRIEETKNQDNFSKELASLGEIFVNDAFGTAHRAHCSTVGVTKFLPTAVCGYLIQKELEFLGNAI 187
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLOK1 (Phosphoglycerate kinase OS=Clostridium kluyveri (strain NBRC 12016) GN=pgk PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.417e-46
Identity = 97/181 (53.59%), Postives = 129/181 (71.27%), Query Frame = 3 
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMAND--CIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +++ D+KGKRV VR D NVPL +   ITD+NR+  ++PTIKYLM + AKVIL SHLG+PKG V P+ SL P+  RLSELL  EV  A D   +GE  +  V  + +G V+LL+N R+  EE KN   F+K+LASL +++VNDAFG+AHRAH ST GV KFL  +V G+L+ KEL++L  A+
Sbjct:    8 IEDVDVKGKRVLVRCDFNVPLQEG-KITDENRLIGSLPTIKYLMENNAKVILCSHLGKPKGEVKPEMSLLPVAKRLSELLKKEVVFAADDNVVGENAKAAVKNMKDGDVILLQNTRYRIEETKNQDNFSKELASLGEIFVNDAFGTAHRAHCSTVGVTKFLPTAVCGYLIQKELEFLGNAI 187
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_NEUCR (Phosphoglycerate kinase OS=Neurospora crassa GN=pgk-1 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.230e-45
Identity = 101/190 (53.16%), Postives = 125/190 (65.79%), Query Frame = 3 
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE-----------KND----PEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDY 644
            +++ DLKGKRV +RVD NVPLD    +T+  R+  A+PTIKY + HGAK V+L SHLGRP G   PKYSLKP+VP L +LLG +V  A DC+G EVE++V +   G V+LLEN+RFH EEE           K D     EF K L  L D+Y+NDAFG+AHRAH+S  G+   L    AGFLM KEL Y
Sbjct:    9 IEDVDLKGKRVLIRVDFNVPLDAEKKVTNPQRIAGAIPTIKYALDHGAKAVVLMSHLGRPDGKPNPKYSLKPVVPELEKLLGKKVTFAPDCVGPEVEEIVNKADNGEVILLENLRFHIEEEGKGTDAEGNKVKADKAKVEEFRKNLTKLGDVYINDAFGTAHRAHSSMVGID--LPVKAAGFLMKKELQY 196
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_DESAH (Phosphoglycerate kinase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=pgk PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.230e-45
Identity = 87/175 (49.71%), Postives = 123/175 (70.29%), Query Frame = 3 
Query:  117 VSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKEL 638
            +  ++E +   K V VRVD N+P+D+N NI DDNR+RA +P + YL+  GAK++L+SH+GRPKG      SL P   RLSELLG EV   +DCIG +V++ V ++  G ++LLEN+RF+K EE+NDPEFA+ LA L  +YVNDAF  +HR  AS   + +F++ + AGFL+ KE+
Sbjct:    1 MKTVREIEFNSKTVLVRVDYNLPMDENGNIADDNRIRATLPLVNYLVDKGAKIVLASHMGRPKGKPAASLSLAPAAKRLSELLGFEVVFVDDCIGPKVKERVDQLEPGQIILLENLRFYKGEEENDPEFARSLAELCQVYVNDAFAVSHRTAASIVAITRFVREACAGFLLEKEV 175
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLOBM (Phosphoglycerate kinase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=pgk PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.230e-45
Identity = 97/187 (51.87%), Postives = 134/187 (71.66%), Query Frame = 3 
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK-YSLKPLVPRLSELLGVEVKMAND--CIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            KKS+   ++ D+K K+V VR D NVPL++   ITD+NR+  A+PT+KYLM  GAK+IL SH+G+PKG   K  SL P+  RLSE+L  EV  A+D   +GE  +K V ++ +G ++LL+N R+ KEE KN+  F+K+LASLAD++VNDAFG+AHRAH ST GV  +LK +  G+L+ KEL +L  AV
Sbjct:    5 KKSI---EDIDVKSKKVLVRCDFNVPLNEG-KITDENRLVGALPTVKYLMEKGAKIILCSHMGKPKGEPKKELSLLPVAKRLSEMLNKEVVFADDDNVVGENAKKAVEDMKDGDIVLLQNTRYRKEETKNEEIFSKELASLADVFVNDAFGTAHRAHCSTVGVTHYLKEAACGYLIQKELKFLGNAV 187
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ARCB4 (Phosphoglycerate kinase OS=Arcobacter butzleri (strain RM4018) GN=pgk PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.606e-45
Identity = 92/176 (52.27%), Postives = 124/176 (70.45%), Query Frame = 3 
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKF--LKPSVAGFLMXKELDY 644
            +K  D+ GK+VF+R D NVP+D+  NITDD R+R+A+ TI+Y + H   VILSSH GRPKG    KYSL P+  RL  LL  ++KMA   I +E  +M  E+  G +LLLEN+RF   E KND E +KKLAS+A++Y+NDAFG +HRAHAS EG++K+  ++   AGFLM KE+ +
Sbjct:    6 IKNIDITGKKVFIRCDFNVPMDEYNNITDDRRIRSALNTIRYCIDHDCSVILSSHFGRPKGGFEEKYSLLPIAKRLHILLKQDIKMAPGVICDETLQMAKELKAGEILLLENMRFEAGETKNDEELSKKLASMAEIYINDAFGVSHRAHASVEGISKYFDIEHKAAGFLMAKEIKF 181
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_CLOTE2.478e-4654.40Phosphoglycerate kinase OS=Clostridium tetani GN=p... [more]
PGK_LEPBL7.211e-4654.65Phosphoglycerate kinase OS=Leptospira borgpetersen... [more]
PGK_LEPBJ7.211e-4654.65Phosphoglycerate kinase OS=Leptospira borgpetersen... [more]
PGK_PENCI9.417e-4651.81Phosphoglycerate kinase OS=Penicillium citrinum GN... [more]
PGK_CLOK59.417e-4653.59Phosphoglycerate kinase OS=Clostridium kluyveri (s... [more]
PGK_CLOK19.417e-4653.59Phosphoglycerate kinase OS=Clostridium kluyveri (s... [more]
PGK_NEUCR1.230e-4553.16Phosphoglycerate kinase OS=Neurospora crassa GN=pg... [more]
PGK_DESAH1.230e-4549.71Phosphoglycerate kinase OS=Desulfobacterium autotr... [more]
PGK_CLOBM1.230e-4551.87Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_ARCB41.606e-4552.27Phosphoglycerate kinase OS=Arcobacter butzleri (st... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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