FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CHLMU (Phosphoglycerate kinase OS=Chlamydia muridarum GN=pgk PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.407e-41
Identity = 94/179 (52.51%), Postives = 121/179 (67.60%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE--KNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAK-FLKPSVAGFLMXKELDYL 647
            +K+   +GK+V VRVD NVP+ D   I DD R+R+A+PTI YL+   A +IL SHLGRPKG      YSL P+VP L   LG  V ++ DC+GE   + VA++  G VLLLENVRFH+ EE  + DP FA +LA+ AD YVNDAFG++HR HAS   V + F   + AGFLM KEL++L
Sbjct:    6 IKDLSPEGKKVLVRVDFNVPIKDG-KILDDVRIRSAMPTINYLLKRDAAIILVSHLGRPKGDMFEEAYSLAPIVPVLEGYLGHHVPLSPDCVGEVARQAVAQLSPGRVLLLENVRFHRGEEHPEEDPSFAVELAAYADFYVNDAFGTSHRKHASVYRVPQMFPDRAAAGFLMEKELEFL 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CHICK (Phosphoglycerate kinase OS=Gallus gallus GN=PGK PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.407e-41
Identity = 98/196 (50.00%), Postives = 121/196 (61.73%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGVT--PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPE---------------FAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            L + D+KGKRV +RVD NVP+ D+  IT++ R++AAVPTIK+ + HGAK V+L SHLGRP GV    K+S  P+   L  LLG EV    DC+G EVEK  A    G V+LLEN+RFH EEE    +               F   L+ L D+YVNDAFG+AHRAH+S  GV   L    AGFLM KELDY   A+
Sbjct:    9 LDKVDVKGKRVVMRVDFNVPMKDH-KITNNQRIKAAVPTIKHCLDHGAKSVVLMSHLGRPDGVPMPDKFSFSPVAVELKALLGREVSFLKDCVGPEVEKACANPANGSVILLENLRFHVEEEGKGKDASGNKIKADAAKVEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGV--HLPQKAAGFLMKKELDYFAKAL 201          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_MARMM (Phosphoglycerate kinase OS=Maricaulis maris (strain MCS10) GN=pgk PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.838e-41
Identity = 92/179 (51.40%), Postives = 120/179 (67.04%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +++AD+ GKRV VRVD NVP+ D   +TD  R+ AA+PTI+YL   GAKV+L +H GRPKG V P+ SL+ +   L++LLG  V  +    GE+      ++  G VLL+EN RF   EE NDP FA  LA L DLYVNDAF +AHRAHASTEG+   L PS AG  + +E+D+LV A+
Sbjct:    7 IQDADVAGKRVLVRVDFNVPMKDG-QVTDATRLEAALPTIEYLTEAGAKVVLLAHFGRPKGAVVPEMSLEAVCQPLADLLGDAVYFSTVTSGEDAVAATMDLEAGEVLLIENTRFAAGEETNDPGFAAALAELGDLYVNDAFSAAHRAHASTEGITHHL-PSYAGLALQREIDHLVAAL 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CANAL (Phosphoglycerate kinase OS=Candida albicans GN=PGK1 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.838e-41
Identity = 100/204 (49.02%), Postives = 129/204 (63.24%), Query Frame = 3
Query:   99 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE-----------KNDPEFAKK----LASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            M+    +SV K+ D+ GKRVF+RVD NVPLD    IT++ R+ AA+PTIKY+  H  K ++L+SHLGRP G    KYSL P+   L +LLG +V   NDC+G EV K V    +G + LLEN+R+H EEE           K DPE  KK    L SLAD+Y+NDAFG+AHRAH+S  G+   +    AGFLM KEL+Y   A+
Sbjct:    1 MSLSNKLSV-KDLDVAGKRVFIRVDFNVPLDGK-TITNNQRIVAALPTIKYVEEHKPKYIVLASHLGRPNGERNDKYSLAPVATELEKLLGQKVTFLNDCVGPEVTKAVENAKDGEIFLLENLRYHIEEEGSSKDKDGKKVKADPEAVKKFRQELTSLADVYINDAFGTAHRAHSSMVGLE--VPQRAAGFLMSKELEYFAKAL 200          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_STAS1 (Phosphoglycerate kinase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=pgk PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.400e-41
Identity = 94/185 (50.81%), Postives = 124/185 (67.03%), Query Frame = 3
Query:  123 VLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            ++ + +LKGK V VR D NVP+ D   ITDDNR+  A+PTIKY++  G KV+L SHLG+ K  + K   +LKP+   L+E LG EV    +  GE +E+ V ++ EG VLL+EN RF     K+E KNDPE  K  ASL D++VNDAFG+AHR HAS  G+A  L+ +VAGFLM KE+ Y+ G V
Sbjct:    5 IVTDLELKGKTVLVRADFNVPMKDG-EITDDNRIVQALPTIKYIIEQGGKVVLFSHLGKVKEESDKAALTLKPVANALTEKLGEEVTFVPETRGETLEQSVKDLNEGDVLLVENTRFEDVDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGIASNLE-TVAGFLMEKEIKYIGGVV 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CHLTR (Phosphoglycerate kinase OS=Chlamydia trachomatis GN=pgk PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.400e-41
Identity = 95/179 (53.07%), Postives = 121/179 (67.60%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKN--DPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAK-FLKPSVAGFLMXKELDYL 647
            +++  L+GK+V VRVD NVP+ D   I DD R+ +A+PTI YL+   A VIL SH+GRPKG      YSL P+VP L   LG  V ++ DCIGE   + VA++  G VLLLENVRFHK EE +  DP FA +LA+ AD YVNDAFG++HR HAS   V + F   + AGFLM KEL++L
Sbjct:    6 IRDLSLEGKKVLVRVDFNVPIKDG-KILDDVRIHSAMPTIHYLLKQDAAVILVSHVGRPKGGVFEEAYSLAPIVPVLEGYLGHHVPLSPDCIGEVARQAVAQLSPGRVLLLENVRFHKGEEHSDEDPSFAIELAAYADFYVNDAFGTSHRKHASVYRVPQLFPDRAAAGFLMEKELEFL 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK2_RHINI (Phosphoglycerate kinase 2 OS=Rhizopus niveus GN=PGK2 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.135e-41
Identity = 98/194 (50.52%), Postives = 124/194 (63.92%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE----------KNDPEFAKK----LASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +++ DLK KRV +RVD NVP+ D   IT++NR+  A+PT+KY + +GA  VIL SHLGRP G    KYSLKP+   + +LLG  V+  NDC+G +VEK       G V+LLEN+RFH EEE          K D E  KK    L +LAD+YVNDAFG+AHRAH+S  GV   L    AGFLM KEL+Y   A+
Sbjct:    9 IRDLDLKNKRVLIRVDFNVPMKDGA-ITNNNRIVQALPTVKYALDNGASAVILMSHLGRPNGEAVAKYSLKPVAAEVEKLLGKPVEFLNDCVGPDVEKACQSATGGKVILLENLRFHIEEEGSAKVRWSKVKADAEAVKKFRASLTALADIYVNDAFGTAHRAHSSMVGVD--LSQRAAGFLMQKELEYFAKAL 199          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BIFAA (Phosphoglycerate kinase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=pgk PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.094e-41
Identity = 94/175 (53.71%), Postives = 119/175 (68.00%), Query Frame = 3
Query:  138 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPE----FAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            DLKGKRV VR D NVPLD    ITDD R++AA+PTIK L   GAKVIL +HLGRPKG V P+ SL P+  RL ELLG+ V +A D  GE+ +  VA + +G V+LL+NVRF+ EE   DPE    +AKK+A+L +++V+D FG  HRA  S   VA  L P+ AG L+ KE+  L
Sbjct:    9 DLKGKRVLVRADFNVPLDGT-TITDDGRIKAALPTIKALREQGAKVILMAHLGRPKGKVVPELSLAPVAARLGELLGITVPLAADTYGEDAQAKVAAMSDGDVVLLQNVRFNPEETSKDPEERAAYAKKIAALGEVFVSDGFGVVHRAQGSNYDVAADL-PAAAGLLVEKEVKAL 181          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_AGRT5 (Phosphoglycerate kinase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=pgk PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.094e-41
Identity = 94/184 (51.09%), Postives = 120/184 (65.22%), Query Frame = 3
Query:   99 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            M A K++  L   D+ GKRV VRVDLNVP+ D   +TD  R+    PTI  L   GAKVIL +H GRPKG    + SL  +VP + ++L   +  A DCIG      VA++ +G +LLLEN RFHK EEKNDP F ++LA+  D+YVNDAF +AHRAHASTEG+A+ L P+ AG  M  EL+ L
Sbjct:    1 MPAFKTIDDLN--DIAGKRVLVRVDLNVPVADG-KVTDATRIERVAPTILELSSKGAKVILLAHFGRPKGEPVAEMSLSQIVPTVEDVLDHAISFATDCIGAPAADAVAKMNDGDILLLENTRFHKGEEKNDPAFVEELAANGDIYVNDAFSAAHRAHASTEGLARHL-PAYAGRTMQAELEAL 180          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_RHOSK (Phosphoglycerate kinase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=pgk PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.347e-41
Identity = 94/180 (52.22%), Postives = 121/180 (67.22%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELL-GVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            L + DL GK V VRVD+NVP++ N  +TD  R+   VPT++ ++  G K +L +H GRPKG V  + SL+ ++P L + L G +V  A DC+G E E+ VA + EG VLLLEN RFH  EEKNDPE A  +A L  +YVNDAF +AHRAHASTEG+A+ L PS AG LM  EL  L  A+
Sbjct:    6 LDDMDLAGKVVLVRVDVNVPME-NGEVTDATRIEKIVPTVEDILKKGGKPVLLAHFGRPKGKVVEEMSLRLVLPALQKALPGTKVSFAADCVGPEPEQAVAAMLEGEVLLLENTRFHAGEEKNDPELAAAMAKLGQVYVNDAFSAAHRAHASTEGLARLL-PSAAGRLMEAELKALEAAL 183          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_CHLMU1.407e-4152.51Phosphoglycerate kinase OS=Chlamydia muridarum GN=... [more]
PGK_CHICK1.407e-4150.00Phosphoglycerate kinase OS=Gallus gallus GN=PGK PE... [more]
PGK_MARMM1.838e-4151.40Phosphoglycerate kinase OS=Maricaulis maris (strai... [more]
PGK_CANAL1.838e-4149.02Phosphoglycerate kinase OS=Candida albicans GN=PGK... [more]
PGK_STAS12.400e-4150.81Phosphoglycerate kinase OS=Staphylococcus saprophy... [more]
PGK_CHLTR2.400e-4153.07Phosphoglycerate kinase OS=Chlamydia trachomatis G... [more]
PGK2_RHINI3.135e-4150.52Phosphoglycerate kinase 2 OS=Rhizopus niveus GN=PG... [more]
PGK_BIFAA4.094e-4153.71Phosphoglycerate kinase OS=Bifidobacterium adolesc... [more]
PGK_AGRT54.094e-4151.09Phosphoglycerate kinase OS=Agrobacterium tumefacie... [more]
PGK_RHOSK5.347e-4152.22Phosphoglycerate kinase OS=Rhodobacter sphaeroides... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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