FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_SPHAL (Phosphoglycerate kinase OS=Sphingopyxis alaskensis GN=pgk PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.835e-36
Identity = 85/175 (48.57%), Postives = 113/175 (64.57%), Query Frame = 3
Query:  138 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            D+ GKRV VRVDLNVP+ D   ++D  R++AA+PTI+ L   GA V+L +H GRPKG   P  SL  ++  + ++LG  V    + +GE  +  VA +  G V +LEN RF+  EE+NDP FA  LA + DLYVNDAF +AHRAH STEG+A+ L P+ AG  M  EL  L  A+
Sbjct:   12 DVTGKRVLVRVDLNVPMIDGA-VSDATRIQAAMPTIRELSDKGAIVLLLAHFGRPKGAKNPTQSLSLVMGGVEDVLGHSVMFIPEAVGEGAKAGVAVLAPGDVAVLENTRFYPGEEQNDPAFADALAEIGDLYVNDAFSAAHRAHGSTEGIARRL-PAYAGRAMEAELKALDAAL 184          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ENTS8 (Phosphoglycerate kinase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=pgk PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.835e-36
Identity = 85/180 (47.22%), Postives = 119/180 (66.11%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKRV +R DLNVP+ +   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SL P+V  L + L   V++A D +         E+ EG +++LENVRF+K E+K+D   AKK ASL D++V DAFG+AHRA AST GVAKF   + AG L+ +ELD L
Sbjct:    2 SVIKMTDLDLAGKRVLIRADLNVPVKEG-KVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLNSPVRLAKDYLDG------VEVAEGELVVLENVRFNKGEKKDDETLAKKYASLCDVFVMDAFGTAHRAQASTHGVAKFADVACAGPLLAEELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BORPA (Phosphoglycerate kinase OS=Bordetella parapertussis GN=pgk PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 8.835e-36
Identity = 84/179 (46.93%), Postives = 119/179 (66.48%), Query Frame = 3
Query:  120 SVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK--GVTPKYSLKPLVPRLSELLGVEVKMANDCI-GEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            ++ K   L GKRVF+R DLNVP DD   I++D R+RA+VP I+  +  G  V+++SHLGRPK   +T   SL P+  RLSELLG++V++  D + G  VE        G V+LLEN R +  E+K+D   ++K+A+L D+YVNDAFG+AHRA A+T G+A+F   + AG L+  EL+ L
Sbjct:    9 ALAKSGALSGKRVFIRADLNVPFDDAGRISEDTRIRASVPGIRLALDAGEAVMVTSHLGRPKEGALTEADSLAPVAQRLSELLGMQVRLVPDWVDGVSVEP-------GEVVLLENCRGNVGEKKDDEGLSRKMAALCDVYVNDAFGTAHRAEATTHGIARFAPVACAGPLLEAELEAL 180          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGKB_TRYBB (Phosphoglycerate kinase, cytosolic OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.835e-36
Identity = 90/204 (44.12%), Postives = 125/204 (61.27%), Query Frame = 3
Query:   99 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-----------------PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEE--EKNDPE---FAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDY 644
            M+ K+  S+  E DLKGK+V +RVD NVPLDD  NIT+D R+R+A+P ++ ++  G   +L SHLGRPKGV+                  K +LKP+   LSELL   V  A DC+      +V+++  G V+LLENVRF+KEE  +K+  E    AK L+S  D+Y++DAFG+AHR  A+  G+ K L    AG+LM KE+ Y
Sbjct:    1 MSLKERKSI-NECDLKGKKVLIRVDFNVPLDDG-NITNDYRIRSALPAVQKVLTEGGSCVLMSHLGRPKGVSMAEGKELGSAGGIPGFEQKATLKPVAKALSELLSRPVTFAPDCLN--AADVVSKMSPGDVVLLENVRFYKEEGSKKSTEEREAMAKILSSYGDVYISDAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISY 200          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ALCBS (Phosphoglycerate kinase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=pgk PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.154e-35
Identity = 82/176 (46.59%), Postives = 116/176 (65.91%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            + + DL GKRV +R DLNVP+ D   +T D R+RA++PTI++ +  GAKV+L SHLGRP       ++SL+P+   L  LLG +V +  D +G        E+ +G V+L ENVRF++ E+K+D   ++K+A+L D+YV DAFG+AHRA AST GV KF   + AG L+  ELD L
Sbjct:    6 MTDLDLAGKRVLIREDLNVPVKDG-KVTSDARIRASLPTIEHALKAGAKVMLMSHLGRPTEGEYAEEFSLQPVADHLGGLLGRDVPLVKDWLGG------VEVADGQVVLCENVRFNQGEKKDDEALSQKMAALCDIYVMDAFGTAHRAQASTHGVGKFAPVACAGPLLANELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGKP_RALEH (Phosphoglycerate kinase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbKP PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.154e-35
Identity = 83/178 (46.63%), Postives = 117/178 (65.73%), Query Frame = 3
Query:  120 SVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK--GVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            ++L    L GKRVF+R DLNVP D   +ITDD R+RA+VP I   +  GA V+++SHLGRP+     P++SL P+  RLSELLG +V + +       +     +P G V+LLEN R +  E+KN  E A+K+A+L D+YVNDAFG+AHRA A+T G+A++   + AG L+  E+D L
Sbjct:   22 ALLAAGGLAGKRVFIRADLNVPQDAAGDITDDTRIRASVPAIAACLQAGAAVMVTSHLGRPQEGAPDPRHSLAPVGRRLSELLGRQVPLLSGWTEGGFQ-----VPPGQVVLLENCRMNTGEKKNSDELAQKMAALCDVYVNDAFGTAHRAEATTHGIARYAPVACAGPLLAAEIDAL 194          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_MANSM (Phosphoglycerate kinase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=pgk PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.507e-35
Identity = 84/180 (46.67%), Postives = 119/180 (66.11%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            SV  + + DL GKR+F+R DLNVP+ D   +T D R+RA +PT+K  +  GAKV+++SHLGRP      P+ SL+P+V  L +  G  V++A + +         E+ EG +++LENVR +K E+KNDPE  KK A+L D++V DAFG+AHRA AST GVA++   + AG L+  ELD L
Sbjct:    2 SVIKMTDLDLAGKRLFIRADLNVPVKDG-KVTSDARIRATIPTLKLALEKGAKVMVTSHLGRPTEGEFKPEDSLQPVVDYLKDA-GFNVRLAQNYLDG------VEVNEGEIVVLENVRINKGEKKNDPELGKKYAALCDVFVMDAFGTAHRAQASTYGVAEYAPVACAGPLLAAELDAL 173          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_LACS1 (Phosphoglycerate kinase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=pgk PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.507e-35
Identity = 84/189 (44.44%), Postives = 121/189 (64.02%), Query Frame = 3
Query:  123 VLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL----KPSVAGFLMXKELDYLVGAV 659
            ++ + D+KGK+V +RVD NVP+ + + I +DNR+ AA+PTI Y++ H  K IL SHLGR K    K   SL+P+  RL+ELL   V       G ++E  +  + +G VLL+EN RF     K+E  NDPE  K  ASL D++VNDAFG+AHR+HAS  G+++ +    K + AG+L+ KE+ +L  AV
Sbjct:    5 IVSDLDVKGKKVLMRVDFNVPIKNGV-IGNDNRIVAALPTINYIIEHDGKAILFSHLGRIKKEEDKKELSLRPVAERLAELLNKPVTFVPATRGAQLEDAINNMNDGDVLLVENTRFEDLDGKKESGNDPELGKYWASLGDVFVNDAFGTAHRSHASNVGISEAMKAEGKQAAAGYLLEKEIKFLGNAV 192          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CAEEL (Probable phosphoglycerate kinase OS=Caenorhabditis elegans GN=pgk-1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.507e-35
Identity = 90/195 (46.15%), Postives = 119/195 (61.03%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGVTP-KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE-----------KND----PEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            + + +L GKRV +RVD NVPL D   IT++ R+ AAVPTI++ + +GAK V+L SHLGRP G    KY+LKP+   L  LL  +V   +DC+G EVE   A+   G V+LLEN+R+H EEE           K D     +F + L  L D+YVNDAFG+AHRAH+S  GV    + S  GFL+  EL Y   A+
Sbjct:    9 IDQLNLAGKRVLIRVDFNVPLKDG-KITNNQRIAAAVPTIQHALSNGAKSVVLMSHLGRPDGRRQDKYTLKPVAEELKALLKKDVLFLDDCVGSEVEAACADPAPGSVILLENLRYHLEEEGKGVDASGAKVKADSAAVKKFRESLTKLGDIYVNDAFGTAHRAHSSMVGVEHSQRAS--GFLLKNELSYFSKAL 200          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_NITMU (Phosphoglycerate kinase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=pgk PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 84/184 (45.65%), Postives = 121/184 (65.76%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK-GV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            SV  + + DLKGKRVF+R DLNVP+ D   +T D R+ A++ TI Y +  G KV+++SHLGRP+ GV + + SLKP+   +SE LG   ++  D +    +     + EG +++LEN RF+K E+KN  E A+K A L D++V DAFG+AHRA AST G+AK+   + AG L+ +ELD L  A+
Sbjct:    2 SVIRVTDLDLKGKRVFIRADLNVPVKDG-KVTSDARISASMGTIDYCLKQGGKVMVTSHLGRPEEGVWSEENSLKPVADNISERLGKPARLIKDWVDGNFD-----VAEGELVILENCRFNKGEKKNADETAQKYAKLCDVFVMDAFGTAHRAEASTYGIAKYAPVACAGILLTEELDALTKAL 179          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_SPHAL8.835e-3648.57Phosphoglycerate kinase OS=Sphingopyxis alaskensis... [more]
PGK_ENTS88.835e-3647.22Phosphoglycerate kinase OS=Enterobacter sakazakii ... [more]
PGK_BORPA8.835e-3646.93Phosphoglycerate kinase OS=Bordetella parapertussi... [more]
PGKB_TRYBB8.835e-3644.12Phosphoglycerate kinase, cytosolic OS=Trypanosoma ... [more]
PGK_ALCBS1.154e-3546.59Phosphoglycerate kinase OS=Alcanivorax borkumensis... [more]
PGKP_RALEH1.154e-3546.63Phosphoglycerate kinase, plasmid OS=Ralstonia eutr... [more]
PGK_MANSM1.507e-3546.67Phosphoglycerate kinase OS=Mannheimia succinicipro... [more]
PGK_LACS11.507e-3544.44Phosphoglycerate kinase OS=Lactobacillus salivariu... [more]
PGK_CAEEL1.507e-3546.15Probable phosphoglycerate kinase OS=Caenorhabditis... [more]
PGK_NITMU1.968e-3545.65Phosphoglycerate kinase OS=Nitrosospira multiformi... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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