FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_STRA1 (Phosphoglycerate kinase OS=Streptococcus agalactiae serotype Ia GN=pgk PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.587e-37
Identity = 89/185 (48.11%), Postives = 121/185 (65.41%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKY--SLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLAD-LYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +K+ DLKGK+V VRVD NVPL D + IT+DNR+ AA+PTIKY++  G + IL SHLGR K    K   SL P+   L+  LG +V       G ++E+ +  + +G VLL+EN RF     K+E KND E  K  ASL D ++VNDAFG+AHRAHAS  G++  ++ +VAGFL+  E+ Y+  AV
Sbjct:    6 VKDVDLKGKKVLVRVDFNVPLKDGV-ITNDNRITAALPTIKYIIEQGGRAILFSHLGRVKEEADKEGKSLAPVAADLAAKLGQDVVFPGVTRGAKLEEAINALEDGQVLLVENTRFEDVDGKKESKNDEELGKYWASLGDGIFVNDAFGTAHRAHASNVGISANVEKAVAGFLLENEIAYIQEAV 189          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_LEUMM (Phosphoglycerate kinase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=pgk PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.587e-37
Identity = 93/197 (47.21%), Postives = 124/197 (62.94%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH--------KEEEKNDPEFAKKLASLAD-LYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            AK +VS L   +L GK+V +RVD NVP+   + I +DNR+ AA+PTIKY++ +  + IL SHLGR K    K   SL P+  RL ELLG +VK      GEE+E  +  + +G VL++EN RF         K E KN+PE  K  ASL D L++NDAFG+AHRAHAS  G+A  +  + AGFLM KE+ +L  AV+
Sbjct:    2 AKLTVSDL---ELSGKKVLMRVDFNVPIKAGV-IGNDNRIVAALPTIKYVLENNGRAILFSHLGRIKSEDDKKELSLAPVAARLGELLGKDVKFVPQTRGEELESAINALQDGEVLMVENTRFEDVVDGEVVKNESKNNPELGKYWASLGDDLFINDAFGTAHRAHASNVGIASNVSQAAAGFLMEKEIKFLGDAVA 194          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_DEIRA (Phosphoglycerate kinase OS=Deinococcus radiodurans GN=pgk PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.685e-37
Identity = 92/176 (52.27%), Postives = 111/176 (63.07%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK-GVTPKYSLKPLVPRLSELLGVEVKMANDCIG-EEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            L + D+KGKRV VRVD NVP+ D + + DD R+ A+VPTIK L+  GA V+L SH GRPK G   KYSLKP+   +S  LG +VK      G +E  + V  +  G V LLENVRF   EEKND     KLA L D +V DAFGSAHRAH+S  GVA  L P  AG L+  E+D L
Sbjct:   26 LSQLDVKGKRVLVRVDYNVPVGDGV-VQDDTRITASVPTIKKLLDGGASVVLMSHFGRPKNGPEDKYSLKPVAEAVSRALGQDVKFIPSLPGSDETLQAVQALRPGEVALLENVRFEAGEEKNDAALNDKLAKLGDAFVLDAFGSAHRAHSSVSGVAGKL-PHAAGGLLQSEVDAL 199          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_NITOC (Phosphoglycerate kinase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=pgk PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.118e-37
Identity = 92/177 (51.98%), Postives = 118/177 (66.67%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCI-GEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            + E DL GKRV +R DLNVPL  N  ITDD R+RA++P+I+  M  GAKV++ SHLGRP        +SL P+   LS LLG EV++A D + G  VEK       G ++L ENVRF++ E+KND   AKK+A+L D+YV DAFGSAHRA AST GVAK+   + AG L+  EL+ L
Sbjct:    6 MSELDLAGKRVLIREDLNVPLK-NGEITDDTRIRASLPSIQQAMQAGAKVMVMSHLGRPTEGEFDAAFSLAPVAGYLSHLLGQEVRLAPDWLEGMAVEK-------GQLVLCENVRFNRGEKKNDEALAKKMAALCDIYVMDAFGSAHRAQASTHGVAKYAPVACAGPLLAGELEAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_STRGG (Phosphoglycerate kinase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=pgk PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.991e-37
Identity = 91/184 (49.46%), Postives = 115/184 (62.50%), Query Frame = 3
Query:  111 KSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHK-EEEKNDPE---FAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            K++  L    + GKRVFVR DLNVPLD    ITDD R+RA VPTI  L   GA+V+++SHLGRPKG   P +SL P   RL ELLG EV  A D +GE     VA + +G V ++EN+RF+  E  K+D E   FA +LA LAD+YV D FG+ HR HAS   +   L P  AG+L+  E+  L
Sbjct:    2 KTIDELLAEGVAGKRVFVRADLNVPLDGT-TITDDGRIRAVVPTIAKLAEAGARVVVASHLGRPKGAPDPAFSLAPAATRLGELLGAEVAFAADTVGESARAAVAGLADGRVAVVENLRFNAGETSKDDAERGAFADQLAQLADVYVGDGFGAVHRKHASVFDLPARL-PHYAGYLIATEVGVL 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_METCA (Phosphoglycerate kinase OS=Methylococcus capsulatus GN=pgk PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.991e-37
Identity = 85/176 (48.30%), Postives = 115/176 (65.34%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            + + DL GKRV +R D NVP+ D   +T D R+RAA+PTI++ +  GA V+L SHLGRP       ++S+KP+  RLSELLG  V +  D +G       A+   G V+L ENVRF+K E+K+D   A++LA+L D+YV DAFG+AHRA AST GV K+   + AG L+  ELD L
Sbjct:    6 MTDIDLAGKRVLIREDFNVPVKDG-RVTSDARIRAALPTIRHALDAGAAVMLMSHLGRPTEGEYAEEFSMKPVADRLSELLGQPVTLVKDYLGG------ADPAVGSVVLFENVRFNKGEKKDDEVLARQLAALCDVYVMDAFGTAHRAEASTHGVGKYAPTACAGLLLATELDAL 174          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BORPE (Phosphoglycerate kinase OS=Bordetella pertussis GN=pgk PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.991e-37
Identity = 86/179 (48.04%), Postives = 120/179 (67.04%), Query Frame = 3
Query:  120 SVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK--GVTPKYSLKPLVPRLSELLGVEVKMANDCI-GEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            ++ K   L GKRVF+R DLNVP DD   I++D R+RA+VP I+  +  GA V+++SHLGRPK   +T   SL P+  RLSELLG++V++  D + G  VE        G V+LLEN R +  E+K+D   ++K+A+L D+YVNDAFG+AHRA A+T G+A+F   + AG L+  ELD L
Sbjct:    9 ALAKSGALSGKRVFIRADLNVPFDDAGRISEDTRIRASVPGIRLALDAGAAVMVTSHLGRPKEGALTEADSLAPVAQRLSELLGMQVRLVPDWVDGVSVEP-------GEVVLLENCRGNVGEKKDDEGLSRKMAALCDVYVNDAFGTAHRAEATTHGIARFAPVACAGPLLEAELDAL 180          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_TETTH (Phosphoglycerate kinase OS=Tetrahymena thermophila GN=PGK PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.044e-36
Identity = 87/190 (45.79%), Postives = 119/190 (62.63%), Query Frame = 3
Query:  141 LKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE---------------KNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            ++ KRV +RVD NVPL +   + D  R++ +VP+IK ++    K ++L SHLGRP G    K+S+KP+VP+L ELLG +V   NDC+G++VE+ V     G ++LLEN+RFH EEE               K   EF K L SL DL+VNDAFG+AHRAH+S  GV    K   AG+L+ +ELDY   A+
Sbjct:   15 IENKRVLMRVDFNVPLKEG-KVKDPTRIQGSVPSIKKILEQNPKGLVLMSHLGRPDGNRVEKHSMKPVVPKLEELLGTKVTFLNDCVGKDVEEAVKSSRNGEIILLENLRFHPEEEGKYIDAAGNKVKADSKAVKEFRKSLTSLGDLFVNDAFGTAHRAHSSMVGVDH--KIRAAGYLLKRELDYFSKAL 201          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PROAC (Phosphoglycerate kinase OS=Propionibacterium acnes GN=pgk PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.044e-36
Identity = 87/183 (47.54%), Postives = 114/183 (62.30%), Query Frame = 3
Query:  120 SVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKND----PEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVG 653
            SV    DL+GKRV +R D NVPLD +  ITDD R++AA+PT+  L   GA+  + +HLGRPKG V PKYSL P+  RL EL+ ++VK+A D +G    K    + +G + L+ENVRF K E   D     E A+K AS  + YV++ FG  HR  AS   VAK L PS AG L+ KE++ L G
Sbjct:    3 SVEDLGDLRGKRVVIRCDFNVPLDGD-KITDDGRIKAALPTLTQLHEAGARTTVLAHLGRPKGAVDPKYSLAPVAKRLGELMNLDVKLAGDVVGPSATKTSESLADGEIALVENVRFEKGETSKDEAERAELAQKYASFGEFYVSNGFGVVHRKQASVYDVAKLL-PSAAGSLVAKEVEVLEG 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_FUSNN (Phosphoglycerate kinase OS=Fusobacterium nucleatum subsp. nucleatum GN=pgk PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.044e-36
Identity = 88/188 (46.81%), Postives = 120/188 (63.83%), Query Frame = 3
Query:  123 VLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKY--SLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL--KPSVAGFLMXKELDYLVGAVS 662
            ++ + DL  K+V +RVD NVP+ D   ITD+NR+  A+PTIKY++ H AK+IL SHLG+ K    K   SLK +  +LSELLG  V    +  GE++E  +  +  G VL+ EN RF     K+E KND E  K  ASL D++VNDAFG+AHRAHAS  G+A+ +    S  GFL+ KEL ++  AV+
Sbjct:    4 IITDLDLNNKKVLMRVDFNVPMKDG-KITDENRIVQALPTIKYVLEHNAKLILFSHLGKVKIEEDKATKSLKAVAEKLSELLGKNVTFIPETRGEKLESAINNLKSGEVLMFENTRFEDLDGKKESKNDSELGKYWASLGDVFVNDAFGTAHRAHASNVGIAENIGNGNSAVGFLVEKELKFIGEAVN 190          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_STRA13.587e-3748.11Phosphoglycerate kinase OS=Streptococcus agalactia... [more]
PGK_LEUMM3.587e-3747.21Phosphoglycerate kinase OS=Leuconostoc mesenteroid... [more]
PGK_DEIRA4.685e-3752.27Phosphoglycerate kinase OS=Deinococcus radiodurans... [more]
PGK_NITOC6.118e-3751.98Phosphoglycerate kinase OS=Nitrosococcus oceani (s... [more]
PGK_STRGG7.991e-3749.46Phosphoglycerate kinase OS=Streptomyces griseus su... [more]
PGK_METCA7.991e-3748.30Phosphoglycerate kinase OS=Methylococcus capsulatu... [more]
PGK_BORPE7.991e-3748.04Phosphoglycerate kinase OS=Bordetella pertussis GN... [more]
PGK_TETTH1.044e-3645.79Phosphoglycerate kinase OS=Tetrahymena thermophila... [more]
PGK_PROAC1.044e-3647.54Phosphoglycerate kinase OS=Propionibacterium acnes... [more]
PGK_FUSNN1.044e-3646.81Phosphoglycerate kinase OS=Fusobacterium nucleatum... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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