FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_THET8 (Phosphoglycerate kinase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=pgk PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.363e-36
Identity = 89/172 (51.74%), Postives = 113/172 (65.70%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAE-IPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKEL 638
            L + D KGKRV VRVD NVP+ D   + D+ R+  ++PT+++L+  GA ++L SHLGRPKG  PKYSL P+   L   L  E + A    G E  +  AE +  G VLLLENVRF   EEKNDPE + + A L + +V DAFGSAHRAHAS  GVA+ L P+ AGFLM KE+
Sbjct:    4 LLDLDPKGKRVLVRVDYNVPVQDG-KVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGPDPKYSLAPVGEALRAHLP-EARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLL-PAYAGFLMEKEV 172          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_FRASN (Phosphoglycerate kinase OS=Frankia sp. (strain EAN1pec) GN=pgk PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.363e-36
Identity = 92/186 (49.46%), Postives = 116/186 (62.37%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLN---ITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMA----NDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKND----PEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            + +  + G RV VR DLNVPLD +     ITDD RVRA+VPTI+ L+   AKVI+ SHLGRPKG    KYSL P+  RL+ELLG+ V  A     D  G+   ++V ++ EG V LLEN+RFH  E   D      FA +L++LA+ YV DAFG+ HRAHAS   V K L P  AG L+  EL+ L
Sbjct:    4 IDDLQVTGHRVLVRSDLNVPLDHSKGAPRITDDGRVRASVPTIQALLDRNAKVIVCSHLGRPKGAPEEKYSLAPVAERLAELLGIPVAFAGDGGGDIAGDRAREVVGQLAEGQVALLENLRFHPGETSKDTVARATFADELSALAEFYVGDAFGAVHRAHASVSEVPKRL-PHAAGRLVLTELEVL 188          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGKE_TRYBB (Phosphoglycerate kinase, cytosolic OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.363e-36
Identity = 90/203 (44.33%), Postives = 122/203 (60.10%), Query Frame = 3
Query:   99 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-----------------PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPE----FAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDY 644
            M+ K+  S+  E DLKGK+V +RVD NVPLDD  NIT+D R+R+A+P ++ ++  G   +L SHLGRPKGV+                  K +LKP+   LSELL   V  A DC+      +V+++  G V+LLENVRF+KEE     E     AK LAS  D+Y++DAFG+AHR  A+  G+ K L    AG+LM KE+ Y
Sbjct:    1 MSLKERKSI-NECDLKGKKVLIRVDFNVPLDDG-NITNDYRIRSALPAVQKVLTEGGSCVLMSHLGRPKGVSMAEGKELRSTGGIPGFEQKATLKPVAKALSELLSRPVTFAPDCLN--AADVVSKMSPGDVVLLENVRFYKEEGSKSTEEREAMAKILASYGDVYISDAFGTAHRDSATMTGIPKILGHGAAGYLMEKEISY 199          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_SALTO (Phosphoglycerate kinase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=pgk PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.780e-36
Identity = 87/185 (47.03%), Postives = 117/185 (63.24%), Query Frame = 3
Query:  111 KSVSVLKEADLKGKRVFVRVDLNVPLDDNLN-ITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDP----EFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            +++  L   ++ G+RV VR DLNVPLD     I DD R+RA +PT+  L+  GAKV++ SHLGRPKG   P +SL+P+  RL ELLG  V  A D +G+     VA++ +G V LLEN+RF+  E   D      FA +LA+LAD YV+DAFG+ HR HAS   V   L P VAG L+ +E++ L
Sbjct:    4 RTLDDLLAEEVTGRRVLVRADLNVPLDKQTGQIADDGRIRAVLPTLSALVQAGAKVVVCSHLGRPKGSPNPVFSLRPVAGRLGELLGAPVHFAEDTVGDSARSTVADLADGQVALLENLRFNPGETSKDEAERGAFADQLAALADAYVDDAFGAVHRRHASVYDVPARL-PHVAGRLVLREVEVL 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BARBK (Phosphoglycerate kinase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=pgk PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.780e-36
Identity = 80/175 (45.71%), Postives = 111/175 (63.43%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            + EA++ GKRV VRVD NVP+     + D+ R+     TI  L   GAK+IL SH  RP+G + P+ SL+P+   L  ++G ++    +CIG  V+  V  + EG +LLLEN+RF+KEEE N+ +FA+ LA   DLYVNDAF  +HRAHAS E +  +L PS AG  + +EL  L
Sbjct:    6 INEANVSGKRVLVRVDFNVPMSQG-KVCDNTRLERHKETICALQKRGAKIILLSHCSRPRGKIVPELSLRPVAKALETIMGQQIFFVEECIGAPVQTAVEALQEGQILLLENLRFYKEEEDNNADFAEALAQQGDLYVNDAFSVSHRAHASVEAITHYL-PSYAGMALQRELQAL 178          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_SALAI (Phosphoglycerate kinase OS=Salinispora arenicola (strain CNS-205) GN=pgk PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.325e-36
Identity = 88/185 (47.57%), Postives = 117/185 (63.24%), Query Frame = 3
Query:  111 KSVSVLKEADLKGKRVFVRVDLNVPLDDNLN-ITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDP----EFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            +++  L   ++ G+RV VR DLNVPLD     ITDD R+RA +PT+  L+  GAKV++ SHLGRPKG   P +SL+P+  RL ELLG  V  A D +G+     VA + +G V LLEN+RF+  E   D      FA +LA+LAD YV+DAFG+ HR HAS   V   L P VAG L+ +E++ L
Sbjct:    4 RTLDDLLAEEVTGRRVLVRADLNVPLDKQTGQITDDGRIRAVLPTLGALVQAGAKVVVCSHLGRPKGSPDPAFSLRPVAGRLGELLGAPVHFAEDTVGDSARSTVAGLADGQVALLENLRFNPGETSKDEAQRGAFADQLAALADAYVDDAFGAVHRRHASVYDVPARL-PHVAGRLVLREVEVL 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BORBR (Phosphoglycerate kinase OS=Bordetella bronchiseptica GN=pgk PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.325e-36
Identity = 85/179 (47.49%), Postives = 120/179 (67.04%), Query Frame = 3
Query:  120 SVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK--GVTPKYSLKPLVPRLSELLGVEVKMANDCI-GEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            ++ K   L GKRVF+R DLNVP DD   I++D R+RA+VP I+  +  GA V+++SHLGRPK   +T   SL P+  RLSELLG++V++  D + G  VE        G V+LLEN R +  E+K+D   ++K+A+L D+YVNDAFG+AHRA A+T G+A+F   + AG L+  EL+ L
Sbjct:    9 ALAKSGALSGKRVFIRADLNVPFDDAGRISEDTRIRASVPGIRLALDAGAAVMVTSHLGRPKEGALTEADSLAPVAQRLSELLGMQVRLVPDWVDGVSVEP-------GEVVLLENCRGNVGEKKDDEGLSRKMAALCDVYVNDAFGTAHRAEATTHGIARFAPVACAGPLLEAELEAL 180          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_VIBVY (Phosphoglycerate kinase OS=Vibrio vulnificus (strain YJ016) GN=pgk PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.037e-36
Identity = 87/185 (47.03%), Postives = 123/185 (66.49%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            SV  + + DL GKRVF+R DLNVP+ D   +T D R+ A++PTIK  +  GAKV+++SHLGRP       ++SL+P+V  L++ L  EVK+A D +         E+  G +++LENVRF+K E+KND E +KK A+L D++V DAFG+AHRA AST GV  F + + AG L+  EL+ L  A+S
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDG-KVTSDARIIASLPTIKLCLEAGAKVMVTSHLGRPTEGEYAEEFSLQPVVNYLNDALDCEVKLAKDYLDG------LELNAGELVVLENVRFNKGEKKNDEELSKKYAALCDVFVMDAFGTAHRAQASTHGVGMFAEVACAGPLLAAELEALGKAMS 179          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_VIBVU (Phosphoglycerate kinase OS=Vibrio vulnificus GN=pgk PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.037e-36
Identity = 87/185 (47.03%), Postives = 123/185 (66.49%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            SV  + + DL GKRVF+R DLNVP+ D   +T D R+ A++PTIK  +  GAKV+++SHLGRP       ++SL+P+V  L++ L  EVK+A D +         E+  G +++LENVRF+K E+KND E +KK A+L D++V DAFG+AHRA AST GV  F + + AG L+  EL+ L  A+S
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDG-KVTSDARIIASLPTIKLCLEAGAKVMVTSHLGRPTEGEYAEEFSLQPVVNYLNDALDCEVKLAKDYLDG------LELNAGELVVLENVRFNKGEKKNDEELSKKYAALCDVFVMDAFGTAHRAQASTHGVGMFAEVACAGPLLAAELEALGKAMS 179          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_THET2 (Phosphoglycerate kinase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=pgk PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.037e-36
Identity = 88/172 (51.16%), Postives = 113/172 (65.70%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAE-IPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKEL 638
            L + D KGKRV VRVD NVP+ D   + D+ R+  ++PT+++L+  GA ++L SHLGRPKG  P+YSL P+   L   L  E + A    G E  +  AE +  G VLLLENVRF   EEKNDPE + + A L + +V DAFGSAHRAHAS  GVA+ L P+ AGFLM KE+
Sbjct:    4 LLDLDPKGKRVLVRVDYNVPVQDG-KVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGPDPRYSLAPVGEALRAHLP-EARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLL-PAYAGFLMEKEV 172          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_THET81.363e-3651.74Phosphoglycerate kinase OS=Thermus thermophilus (s... [more]
PGK_FRASN1.363e-3649.46Phosphoglycerate kinase OS=Frankia sp. (strain EAN... [more]
PGKE_TRYBB1.363e-3644.33Phosphoglycerate kinase, cytosolic OS=Trypanosoma ... [more]
PGK_SALTO1.780e-3647.03Phosphoglycerate kinase OS=Salinispora tropica (st... [more]
PGK_BARBK1.780e-3645.71Phosphoglycerate kinase OS=Bartonella bacilliformi... [more]
PGK_SALAI2.325e-3647.57Phosphoglycerate kinase OS=Salinispora arenicola (... [more]
PGK_BORBR2.325e-3647.49Phosphoglycerate kinase OS=Bordetella bronchisepti... [more]
PGK_VIBVY3.037e-3647.03Phosphoglycerate kinase OS=Vibrio vulnificus (stra... [more]
PGK_VIBVU3.037e-3647.03Phosphoglycerate kinase OS=Vibrio vulnificus GN=pg... [more]
PGK_THET23.037e-3651.16Phosphoglycerate kinase OS=Thermus thermophilus (s... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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