FC920404

Overview
NameFC920404
Unique NameFC920404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 76/225 (33.78%), Postives = 120/225 (53.33%), Query Frame = 1
Query:    1 VTLLGAC--PEAWSLVYEYLPNGSLQDRLFRK-SNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRR----------AVSCGKLSSILD-PLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQL 633
            V L+G C   E   LVYE++  GSL++ LFR+ +   PL W  R  +A + A GL FLHS  P K+++ D+K  NILLD++ ++K+ DFG+ R    D       + ST   G++ YA PEY  +G L  +SD YSFG+++L++L+G+  +      +             S  K+  I+D  L   +    A R+  + +QC     + RP +   +V+ L+QL
Sbjct:  134 VKLIGYCLEDEHRLLVYEFMQKGSLENHLFRRGAYFKPLPWFLRVNVALDAAKGLAFLHSD-PVKVIYRDIKASNILLDADYNAKLSDFGLAR----DGPMGDLSYVSTRVMGTYGYAAPEYMSSGHLNARSDVYSFGVLLLEILSGKRALDHNRPAKEENLVDWARPYLTSKRKVLLIVDNRLDTQYLPEEAVRMASVAVQCLSFEPKSRPTM-DQVVRALQQL 352          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: IKU2_ARATH (Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 67/218 (30.73%), Postives = 111/218 (50.92%), Query Frame = 1
Query:   19 CPEAWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAP--KGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLP-----------VGLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQL 633
            C ++  LVYEY+PNGSL ++L  +     + W+ R  +A   A GL +LH      ++H D+K  NILLD E   +I DFG+ +++  D++        +AP  KG+  Y  PEY  T  +  KSD YSFG+++++L+TG+ P           V     V +  +   +  ++D    D     A +++ + L C +   + RP    S+V  LE++
Sbjct:  754 CEDSKLLVYEYMPNGSLWEQLHERRGEQEIGWRVRQALALGAAKGLEYLHHGLDRPVIHRDVKSSNILLDEEWRPRIADFGLAKIIQADSVQ----RDFSAPLVKGTLGYIAPEYAYTTKVNEKSDVYSFGVVLMELVTGKKPLETDFGENNDIVMWVWSVSKETNREMMMKLIDTSIEDEYKEDALKVLTIALLCTDKSPQARP-FMKSVVSMLEKI 966          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: CRK26_ARATH (Cysteine-rich receptor-like protein kinase 26 OS=Arabidopsis thaliana GN=CRK26 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 78/239 (32.64%), Postives = 121/239 (50.63%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGE-------------VRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERP-VPSFF 669
            V LLG   E     LVYE+LP+ SL   +F     + L W+ R +I   +A GL +LH     +I+H DLK  NILLD E++ KI DFG+ RL   D       +R     G+F Y  PEY   G  + K+D YSFG+++L++++G+   G + E              +  V+   +  IL  ++  + + +  R +++GL C +    ERP +  S+V  L+   +A   P  P+FF
Sbjct:  401 VKLLGYSIEGTERLLVYEFLPHTSLDKFIFDPIQGNELEWEIRYKIIGGVARGLLYLHQDSRLRIIHRDLKASNILLDEEMTPKIADFGMARLFDIDHTTQRYTNRIV---GTFGYMAPEYVMHGQFSFKTDVYSFGVLVLEIISGKKNSGFSSEDSMGDLISFAWRNWKEGVALNLVDKILMTMS-SYSSNMIMRCINIGLLCVQEKVAERPSMA-SVVLMLDGHTIALSEPSKPAFF 634          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y2706_ARATH (Probable receptor-like protein kinase At2g47060 OS=Arabidopsis thaliana GN=At2g47060 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.799e-22
Identity = 81/229 (35.37%), Postives = 111/229 (48.47%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVS-----PLL-WKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV---------GLAGEVRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQL 633
            V LLG C +  S  L YE+  NGSL D L  +  V      P+L W  R +IA   A GL +LH      I+H D+K  N+LL  +  +KI DF +     +    L     ST   G+F Y  PEY  TG L  KSD YSFG+++L+LLTGR PV          L       +S  K+   +D  L GD+P     +L  +   C +     RP+++  +VK L+ L
Sbjct:  129 VQLLGYCVDGNSRILSYEFANNGSLHDILHGRKGVKGAQPGPVLSWYQRVKIAVGAARGLEYLHEKANPHIIHRDIKSSNVLLFEDDVAKIADFDLSNQAPDMAARL----HSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHRLPRGQQSLVTWATPKLSEDKVKQCVDARLGGDYPPKAVAKLAAVAALCVQYEADFRPNMS-IVVKALQPL 352          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: RLK5_ARATH (Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.799e-22
Identity = 74/197 (37.56%), Postives = 100/197 (50.76%), Query Frame = 1
Query:   37 LVYEYLPNGSLQDRLF--RKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV-------GLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDI 600
            LVYEY+PNGSL D L   RK  V  L W +R RIA + A GL +LH      IVH D+K  NILLDS+  +K+ DFGI ++        P      A  GS  Y  PEY  T  +  KSD YSFG+++L+L+TG+ P         +A  V  A+    L  ++DP           +++ +GL C       RP +
Sbjct:  764 LVYEYMPNGSLADVLHGDRKGGVV-LGWPERLRIALDAAEGLSYLHHDCVPPIVHRDVKSSNILLDSDYGAKVADFGIAKVGQMSGSKTPEAMSGIA--GSCGYIAPEYVYTLRVNEKSDIYSFGVVLLELVTGKQPTDSELGDKDMAKWVCTALDKCGLEPVIDPKLDLKFKEEISKVIHIGLLCTSPLPLNRPSM 957          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y5838_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.655e-22
Identity = 63/149 (42.28%), Postives = 85/149 (57.05%), Query Frame = 1
Query:    1 VTLLGACP--EAWSLVYEYLPNGSLQDRLFRKSNVS--PLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGR 435
            V LLG C   +   L+YEY+ NG L D+L      S  PL W  R +IA   A GL +LH S   +I+H ++  + ILL +E   KI DFG+ RL+     +L +F       G F Y  PEY RT V TPK D YSFG+++L+L+TG+
Sbjct:  359 VPLLGYCVANKERLLMYEYMANGYLYDQLHPADEESFKPLDWPSRLKIAIGTAKGLAWLHHSCNPRIIHRNISSKCILLTAEFEPKISDFGLARLMNPIDTHLSTF--VNGEFGDFGYVAPEYSRTMVATPKGDVYSFGVVLLELVTGQ 505          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.655e-22
Identity = 71/217 (32.72%), Postives = 104/217 (47.93%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVG---------LAGEVRRAVSCGKLSSILDPLAGD--------WPTFVARRLVDLGLQCCELYGRERP 594
            V +LG C E     L+YEYL N SL   LF K+  S L W +R  I   +A GL +LH     +I+H DLK  NILLD  +  KI DFG+ R+   D     +   +    G++ Y  PEY   G+ + KSD +SFG+I+L++++G+   G         L   V      G+   I+DP+  D        +      + + +GL C +     RP
Sbjct:  585 VQVLGCCIEGDEKMLIYEYLENLSLDSYLFGKTRRSKLNWNERFDITNGVARGLLYLHQDSRFRIIHRDLKVSNILLDKNMIPKISDFGMARIFERD----ETEANTMKVVGTYGYMSPEYAMYGIFSEKSDVFSFGVIVLEIVSGKKNRGFYNLDYENDLLSYVWSRWKEGRALEIVDPVIVDSLSSQPSIFQPQEVLKCIQIGLLCVQELAEHRP 797          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: PSKR1_DAUCA (Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.655e-22
Identity = 83/228 (36.40%), Postives = 110/228 (48.25%), Query Frame = 1
Query:    1 VTLLGAC--PEAWSLVYEYLPNGSLQDRLFRKSNVSPLL-WKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLP-SFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV---------GLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLV-DLGLQCCELYGRERPDITPSLVKELEQLHVA 642
            V LLG C       L+Y Y+ NGSL   L  K +  P L WK R RIA   A GL +LH S    I+H D+K  NILL     + + DFG+ RL+      LP   H +T   G+  Y  PEY +  V T K D YSFG+++L+LLTGR P+          L   V +  +  + S I DP   D        LV ++  +C     + RP  T  LV  LE + V+
Sbjct:  800 VHLLGYCNYKNDKLLIYSYMDNGSLDYWLHEKVDGPPSLDWKTRLRIARGAAEGLAYLHQSCEPHILHRDIKSSNILLSDTFVAHLADFGLARLI------LPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGRRPMDVCKPRGSRDLISWVLQMKTEKRESEIFDPFIYDKDHAEEMLLVLEIACRCLGENPKTRP-TTQQLVSWLENIDVS 1020          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: CRK35_ARATH (Putative cysteine-rich receptor-like protein kinase 35 OS=Arabidopsis thaliana GN=CRK35 PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.655e-22
Identity = 73/221 (33.03%), Postives = 109/221 (49.32%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGR----------LPVGLAGEVRRAVSCGKLSSILDPLAGD-WPTFVARRLVDLGLQCCELYGRERPDITPSLVKEL 624
            V LLG C E     LVYE++PN SL   LF  +    L W  R  I   IA G+ +LH      I+H DLK  NILLD++++ KI DFG+ R+   D     S   +    G+F Y  PEY   G  + KSD YSFG+++L++++G+              L     R    G    ++DP  G+ + +  A R + + L C +    +RP + P+++  L
Sbjct:  402 VRLLGFCLEGEEKILVYEFVPNKSLDYFLFDPAKQGELDWTRRYNIIGGIARGILYLHQDSRLTIIHRDLKASNILLDADMNPKIADFGMARIFGVD----QSQANTRRIAGTFGYMSPEYAMRGHFSMKSDVYSFGVLVLEIISGKKNSSFYNIDDSGSNLVTHAWRLWRNGSPLELVDPTIGESYQSSEATRCIHIALLCVQEDPADRP-LLPAIIMML 617          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 74/228 (32.46%), Postives = 116/228 (50.88%), Query Frame = 1
Query:    7 LLGAC--PEAWSLVYEYLPNGSLQDRLFRKSNVSPLL-WKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLA-----------GEVRRAVSCGKLSSILD-PLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAE 645
            L G C  P    LVY Y+ NGS+   L  +   +P L W  R  IA   A GL +LH    +KI+H D+K  NILLD E  + + DFG+ +L+  +       H +TA +G+  +  PEY  TG  + K+D + +G+++L+L+TG+    LA             V+  +   KL S++D  L G +      +L+ + L C +    ERP ++  +V+ LE   +AE
Sbjct:  354 LRGFCMTPTERLLVYPYMANGSVASCLRERPEGNPALDWPKRKHIALGSARGLAYLHDHCDQKIIHRDVKAANILLDEEFEAVVGDFGLAKLMNYN-----DSHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLARLANDDDIMLLDWVKEVLKEKKLESLVDAELEGKYVETEVEQLIQMALLCTQSSAMERPKMS-EVVRMLEGDGLAE 575          
The following BLAST results are available for this feature:
BLAST of FC920404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
BIK1_ARATH1.256e-2233.78Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
IKU2_ARATH1.641e-2230.73Receptor-like protein kinase HAIKU2 OS=Arabidopsis... [more]
CRK26_ARATH1.641e-2232.64Cysteine-rich receptor-like protein kinase 26 OS=A... [more]
Y2706_ARATH2.799e-2235.37Probable receptor-like protein kinase At2g47060 OS... [more]
RLK5_ARATH2.799e-2237.56Receptor-like protein kinase 5 OS=Arabidopsis thal... [more]
Y5838_ARATH3.655e-2242.28Probably inactive leucine-rich repeat receptor-lik... [more]
SRK6_BRAOE3.655e-2232.72Putative serine/threonine-protein kinase receptor ... [more]
PSKR1_DAUCA3.655e-2236.40Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR... [more]
CRK35_ARATH3.655e-2233.03Putative cysteine-rich receptor-like protein kinas... [more]
SERK4_ARATH4.774e-2232.46Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC32007H03EF RVDevelop1 Citrus clementina cDNA clone C32007H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920404 ID=FC920404; Name=FC920404; organism=Citrus clementina; type=EST; length=700bp
GTGACTCTGCTTGGCGCATGCCCAGAAGCCTGGTCCCTTGTATATGAGTA
TTTGCCCAATGGTAGTCTCCAAGACCGTCTTTTCCGTAAAAGCAACGTTT
CTCCCTTGTTATGGAAGGATCGAGCTCGGATTGCAGCTGAAATAGCTAGC
GGCCTTTGCTTTTTGCACTCATCCAAACCTGAAAAGATTGTCCATGGTGA
TTTGAAACCACAAAACATTCTTCTAGACTCTGAACTCAGCAGCAAGATAT
GCGATTTTGGCATCTGCCGGCTGGTAACCGAGGACACCCTTTATTTGCCC
AGTTTTCATCGGAGCACTGCGCCAAAGGGTTCTTTTCCATATGCAGATCC
AGAGTACCACAGGACTGGAGTCCTAACTCCCAAGTCCGACAGTTACTCCT
TTGGGTTGATAATCCTACAGCTACTTACTGGAAGGCTGCCAGTTGGGTTA
GCAGGTGAAGTGCGAAGAGCTGTGTCATGCGGGAAGTTATCATCCATCTT
GGATCCATTAGCTGGAGATTGGCCTACGTTTGTTGCAAGGCGTTTAGTGG
ACCTGGGATTGCAATGCTGTGAATTGTACGGTAGGGAGCGACCCGATATC
ACACCATCTCTGGTAAAGGAATTGGAACAGCTGCATGTTGCAGAGGAACG
ACCAGTTCCATCATTCTTTTTGTGCCCCATTCTTCAGGAAATAATGCATG
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