FC920404

Overview
NameFC920404
Unique NameFC920404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig398 contig Ccv1_Contig398:366..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: AAPK1_RAT (5'-AMP-activated protein kinase catalytic subunit alpha-1 OS=Rattus norvegicus GN=Prkaa1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 1 
Query:   37 LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLT-PKSDSYSFGLIILQLLTGRLP 441
            +V EY+  G L D + +   +     K+  R+  +I SG+ + H      +VH DLKP+N+LLD+ +++KI DFG+  ++++       F R++   GS  YA PE     +   P+ D +S G+I+  LL G LP
Sbjct:  102 MVMEYVSGGELFDYICKNGRLDE---KESRRLFQQILSGVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG-----EFLRTSC--GSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLP 224
[Close]
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: AAPK1_PONAB (5'-AMP-activated protein kinase catalytic subunit alpha-1 (Fragment) OS=Pongo abelii GN=PRKAA1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 1 
Query:   37 LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLT-PKSDSYSFGLIILQLLTGRLP 441
            +V EY+  G L D + +   +     K+  R+  +I SG+ + H      +VH DLKP+N+LLD+ +++KI DFG+  ++++       F R++   GS  YA PE     +   P+ D +S G+I+  LL G LP
Sbjct:   97 MVMEYVSGGELFDYICKNGRLDE---KESRRLFQQILSGVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG-----EFLRTSC--GSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLP 219
[Close]
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: AAPK1_PIG (5'-AMP-activated protein kinase catalytic subunit alpha-1 (Fragments) OS=Sus scrofa GN=PRKAA1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 1 
Query:   37 LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLT-PKSDSYSFGLIILQLLTGRLP 441
            +V EY+  G L D + +   +     K+  R+  +I SG+ + H      +VH DLKP+N+LLD+ +++KI DFG+  ++++       F R++   GS  YA PE     +   P+ D +S G+I+  LL G LP
Sbjct:   52 MVMEYVSGGELFDYICKNGRLDE---KESRRLFQQILSGVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG-----EFLRTSC--GSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLP 174
[Close]
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: AAPK1_MOUSE (5'-AMP-activated protein kinase catalytic subunit alpha-1 OS=Mus musculus GN=Prkaa1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 1 
Query:   37 LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLT-PKSDSYSFGLIILQLLTGRLP 441
            +V EY+  G L D + +   +     K+  R+  +I SG+ + H      +VH DLKP+N+LLD+ +++KI DFG+  ++++       F R++   GS  YA PE     +   P+ D +S G+I+  LL G LP
Sbjct:  102 MVMEYVSGGELFDYICKNGRLDE---KESRRLFQQILSGVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG-----EFLRTSC--GSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLP 224
[Close]
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: AAPK1_HUMAN (5'-AMP-activated protein kinase catalytic subunit alpha-1 OS=Homo sapiens GN=PRKAA1 PE=1 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 1 
Query:   37 LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLT-PKSDSYSFGLIILQLLTGRLP 441
            +V EY+  G L D + +   +     K+  R+  +I SG+ + H      +VH DLKP+N+LLD+ +++KI DFG+  ++++       F R++   GS  YA PE     +   P+ D +S G+I+  LL G LP
Sbjct:  102 MVMEYVSGGELFDYICKNGRLDE---KESRRLFQQILSGVDYCHR---HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG-----EFLRTSC--GSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLP 224
The following BLAST results are available for this feature:
BLAST of FC920404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
AAPK1_RAT8.446e-1133.095'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK1_PONAB8.446e-1133.095'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK1_PIG8.446e-1133.095'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK1_MOUSE8.446e-1133.095'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK1_HUMAN8.446e-1133.095'-AMP-activated protein kinase catalytic subunit ... [more]

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Properties
Property NameValue
Genbank descriptionC32007H03EF RVDevelop1 Citrus clementina cDNA clone C32007H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920404 ID=FC920404; Name=FC920404; organism=Citrus clementina; type=EST; length=700bp
GTGACTCTGCTTGGCGCATGCCCAGAAGCCTGGTCCCTTGTATATGAGTA
TTTGCCCAATGGTAGTCTCCAAGACCGTCTTTTCCGTAAAAGCAACGTTT
CTCCCTTGTTATGGAAGGATCGAGCTCGGATTGCAGCTGAAATAGCTAGC
GGCCTTTGCTTTTTGCACTCATCCAAACCTGAAAAGATTGTCCATGGTGA
TTTGAAACCACAAAACATTCTTCTAGACTCTGAACTCAGCAGCAAGATAT
GCGATTTTGGCATCTGCCGGCTGGTAACCGAGGACACCCTTTATTTGCCC
AGTTTTCATCGGAGCACTGCGCCAAAGGGTTCTTTTCCATATGCAGATCC
AGAGTACCACAGGACTGGAGTCCTAACTCCCAAGTCCGACAGTTACTCCT
TTGGGTTGATAATCCTACAGCTACTTACTGGAAGGCTGCCAGTTGGGTTA
GCAGGTGAAGTGCGAAGAGCTGTGTCATGCGGGAAGTTATCATCCATCTT
GGATCCATTAGCTGGAGATTGGCCTACGTTTGTTGCAAGGCGTTTAGTGG
ACCTGGGATTGCAATGCTGTGAATTGTACGGTAGGGAGCGACCCGATATC
ACACCATCTCTGGTAAAGGAATTGGAACAGCTGCATGTTGCAGAGGAACG
ACCAGTTCCATCATTCTTTTTGTGCCCCATTCTTCAGGAAATAATGCATG
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