FC920404

Overview
NameFC920404
Unique NameFC920404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig398 contig Ccv1_Contig398:366..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: ACR4_ARATH (Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 77/236 (32.63%), Postives = 127/236 (53.81%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNV--SPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAV-------SCGKLSSILDPLAGDWPTFVA-RRLVDLGLQCCELYGRERPD---ITPSLVKELEQL--HVAEERPV 657
            ++LLG C E     LVYE++ +GSL + L  K+      L W  R  IA + A G+ +LH      ++H D+K  NIL+D E ++++ DFG+  L   D+        +  P G+  Y DPEY+R   LT KSD YSFG+++L++L+GR  + +  E    V         G ++++LDP+        A +R+V +  +C  + G++RP    +T +L + L QL  + + E+P+
Sbjct:  571 LSLLGYCEECGERLLVYEFMAHGSLHNHLHGKNKALKEQLDWVKRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPVDS----GSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMHYEEGNIVEWAVPLIKAGDINALLDPVLKHPSEIEALKRIVSVACKCVRMRGKDRPSMDKVTTALERALAQLMGNPSSEQPI 802          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y5182_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51820 OS=Arabidopsis thaliana GN=At1g51820 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 80/227 (35.24%), Postives = 121/227 (53.30%), Query Frame = 1
Query:    1 VTLLGACPEA--WSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICR--LVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGE-------VRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAE 645
            V L+G C E    +L+YEY+ NG L++ +    N   L W  R +I  E A GL +LH+     +VH D+K  NILL+    +K+ DFG+ R  L+  +T      H ST   G+  Y DPEYHRT  LT KSD YSFG+++L+++T R  +  + E       V   ++ G + SI+DP L  D+ +    + V+L + C       RP ++  +V EL +   +E
Sbjct:  635 VGLVGYCDEGDNLALIYEYMANGDLKEHMSGTRNRFILNWGTRLKIVIESAQGLEYLHNGCKPPMVHRDVKTTNILLNEHFEAKLADFGLSRSFLIEGET------HVSTVVAGTPGYLDPEYHRTNWLTEKSDVYSFGILLLEIITNRHVIDQSREKPHIGEWVGVMLTKGDIQSIMDPSLNEDYDSGSVWKAVELAMSCLNHSSARRPTMS-QVVIELNECLASE 854          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y5181_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 79/225 (35.11%), Postives = 118/225 (52.44%), Query Frame = 1
Query:    1 VTLLGACPEA--WSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRR-------AVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAE 645
            V L+G C E    +L+YEY+ NG L + +  K   S L W  R +IA E A GL +LH+     +VH D+K  NILL+    +K+ DFG+ R    +       H ST   G+  Y DPEY+RT  LT KSD YSFG+++L ++T +  +    E R         ++ G + SI DP L GD+ +    + V+L + C       RP ++  +V EL++   +E
Sbjct:  634 VGLVGYCEEGDKLALIYEYMANGDLDEHMSGKRGGSILNWGTRLKIALEAAQGLEYLHNGCKPLMVHRDVKTTNILLNEHFDTKLADFGLSRSFPIE----GETHVSTVVAGTIGYLDPEYYRTNWLTEKSDVYSFGVVLLVMITNQPVIDQNREKRHIAEWVGGMLTKGDIKSITDPNLLGDYNSGSVWKAVELAMSCMNPSSMTRPTMS-QVVFELKECLASE 853          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 80/212 (37.74%), Postives = 111/212 (52.36%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGR------LP---VGLAGEVRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDI 600
            V+L+G C E     LVYEY+ NG L+  L+  +++ PL WK R  I    A GL +LH+   + I+H D+K  NILLD  L +K+ DFG+ +        L   H STA KGSF Y DPEY R   LT KSD YSFG++++++L  R      LP   V +A         G L  I+D  L G       ++  +   +C   YG +RP +
Sbjct:  567 VSLIGYCDERSEMILVYEYMANGPLRSHLYG-ADLPPLSWKQRLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDENLVAKVADFGLSKTGPS----LDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCCRPALNPVLPREQVNIAEWAMAWQKKGLLDQIMDSNLTGKVNPASLKKFGETAEKCLAEYGVDRPSM 773          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: CRK39_ARATH (Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana GN=CRK39 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 79/229 (34.50%), Postives = 116/229 (50.66%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAVSC-----GKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERPVPSF 666
            V LLG C E     LVYE++PN SL   +F     S L W+ R RI   IA GL +LH     KI+H DLK  NILLD+E++ K+ DFG  RL   D     +  R    +G   Y  PEY   G ++ KSD YSFG+++L++++G       GE   A +      GK   I+DP   + P     +L+ +GL C +    +RP ++  ++    + ++      P+F
Sbjct:  410 VKLLGFCNEGDEQILVYEFVPNSSLDHFIFDDEKRSLLTWEMRYRIIEGIARGLLYLHEDSQLKIIHRDLKASNILLDAEMNPKVADFGTARLFDSDETRAET-KRIAGTRG---YMAPEYLNHGQISAKSDVYSFGVMLLEMISGERNNSFEGEGLAAFAWKRWVEGKPEIIIDPFLIEKPRNEIIKLIQIGLLCVQENPTKRPTMSSVIIWLGSETNIIPLPKAPAF 634          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: CRK36_ARATH (Cysteine-rich receptor-like protein kinase 36 OS=Arabidopsis thaliana GN=CRK36 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 74/205 (36.10%), Postives = 109/205 (53.17%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAVSC-----GKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERP 594
            V LLG C E     LVYE++PN SL   +F +     L W  R RI   +A GL +LH     +I+H DLK  NILLD+E++ K+ DFG+ RL   D     +   ++   G++ Y  PEY R G  + KSD YSFG+++L++++G        E   A +      G+L SI+DP   + P     +L+ +GL C +    +RP
Sbjct:  397 VKLLGFCNEGNEEILVYEHVPNSSLDHFIFDEDKRWLLTWDVRYRIIEGVARGLLYLHEDSQLRIIHRDLKASNILLDAEMNPKVADFGMARLFNMD----ETRGETSRVVGTYGYMAPEYVRHGQFSAKSDVYSFGVMLLEMISGEKNKNFETEGLPAFAWKRWIEGELESIIDPYLNENPRNEIIKLIQIGLLCVQENAAKRP 597          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y5596_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana GN=At5g59680 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 78/225 (34.67%), Postives = 121/225 (53.78%), Query Frame = 1
Query:    1 VTLLGACPEA--WSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVG-------LAGEVRRAVSCGKLSSILD-PLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAE 645
            V+L+G C E    +L+YE++PNG L+  L  K     + W  R RIAAE A GL +LH      +VH D+K  NILLD    +K+ DFG+ R            H ST   G+  Y DPEY+ T  L+ KSD YSFG+++L+++T +  +        +   V   ++ G ++ I+D  L GD+ +  A R ++L + C +     RP ++  +V EL++  V+E
Sbjct:  637 VSLVGYCDEGDHLALIYEFVPNGDLRQHLSGKGGKPIVNWGTRLRIAAEAALGLEYLHIGCTPPMVHRDVKTTNILLDEHYKAKLADFGLSRSFPVG----GESHVSTVIAGTPGYLDPEYYHTSRLSEKSDVYSFGIVLLEMITNQAVIDRNRRKSHITQWVGSELNGGDIAKIMDLKLNGDYDSRSAWRALELAMSCADPTSARRPTMS-HVVIELKECLVSE 856          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 86/225 (38.22%), Postives = 124/225 (55.11%), Query Frame = 1
Query:    1 VTLLGAC--PEAWSLVYEYLPNGSLQDRLFRKS-NVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGR------LPVGLAGEVRRA----VSCGKLSSILD-PLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQL 633
            V L+G C   E   LVYE++P GSL++ LFR+     PL WK R ++A   A GL FLHSS+  ++++ D K  NILLDSE ++K+ DFG+ +    D       H ST   G+  YA PEY  TG LT KSD YSFG+++L+LL+GR       P G    V  A    V+  K+  ++D  L   +    A ++  L L+C     + RP+++  +V  LE +
Sbjct:  135 VKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGLYFQPLSWKLRLKVALGAAKGLAFLHSSET-RVIYRDFKTSNILLDSEYNAKLSDFGLAK----DGPIGDKSHVSTRVMGTHGYAAPEYLATGHLTTKSDVYSFGVVLLELLSGRRAVDKNRPSGERNLVEWAKPYLVNKRKIFRVIDNRLQDQYSMEEACKVATLSLRCLTTEIKLRPNMS-EVVSHLEHI 353          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: ACCR3_ARATH (Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 85/237 (35.86%), Postives = 121/237 (51.05%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNV---SPLL--WKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGR----------------LPVGLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDL----GLQCCELYGRERPDITPSLVKELEQ 630
            V L+G C E     LVY+Y+ NG+L D L  K+NV   S L+  WK R +IA + A G+ +LH+     I+H D+K  NILLDS   +++ DFG+  +          + R T   G+  Y DPEY+   VLT KSD Y  G+++L+LLTG+                +PV L      A++  +LS+ILDP  G  P       V+L     + C    GR RP +T  +V  LE+
Sbjct:  558 VRLVGYCEEREEKLLVYDYMKNGALYDHLHDKNNVEKHSSLINSWKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDSNWVARVSDFGLSLMGPVLGKDHNPYQRPTKAAGTVGYIDPEYYSLNVLTDKSDVYGLGVVLLELLTGKRAIFRNNGDVEEEEGCVPVHLVDYSVPAITADELSTILDPRVGS-PELGEGDAVELVAYTAMHCVNAEGRNRPTMT-DIVGNLER 792          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: WAKLF_ARATH (Wall-associated receptor kinase-like 6 OS=Arabidopsis thaliana GN=WAKL6 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 67/152 (44.08%), Postives = 89/152 (58.55%), Query Frame = 1
Query:    1 VTLLGAC--PEAWSLVYEYLPNGSLQDRLFRKS--NVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV 444
            V LLG C   E   LVYEY+PNG L  RL  KS  N   + W+ R RIA EIA  L ++HS+    I H D+K  NILLD +  +K+ DFG  R +T     +   H +T   G+F Y DPEY  +   T KSD YSFG+++++L+TG  P+
Sbjct:  489 VKLLGCCLGTEVPVLVYEYIPNGDLFKRLHEKSESNDYTMTWEVRLRIAIEIAGALSYMHSAASIPIYHRDIKTTNILLDEKYRAKVSDFGTSRSIT-----IAQTHLTTLVAGTFGYMDPEYFLSSQYTDKSDVYSFGVVLVELITGEKPL 635          
The following BLAST results are available for this feature:
BLAST of FC920404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
ACR4_ARATH1.098e-2632.63Serine/threonine-protein kinase-like protein ACR4 ... [more]
Y5182_ARATH1.434e-2635.24Probable LRR receptor-like serine/threonine-protei... [more]
Y5181_ARATH1.434e-2635.11Probable LRR receptor-like serine/threonine-protei... [more]
THE1_ARATH1.434e-2637.74Receptor-like protein kinase THESEUS 1 OS=Arabidop... [more]
CRK39_ARATH1.434e-2634.50Putative cysteine-rich receptor-like protein kinas... [more]
CRK36_ARATH1.434e-2636.10Cysteine-rich receptor-like protein kinase 36 OS=A... [more]
Y5596_ARATH1.873e-2634.67Probable LRR receptor-like serine/threonine-protei... [more]
APK1A_ARATH1.873e-2638.22Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
ACCR3_ARATH1.873e-2635.86Putative serine/threonine-protein kinase-like prot... [more]
WAKLF_ARATH4.173e-2644.08Wall-associated receptor kinase-like 6 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC32007H03EF RVDevelop1 Citrus clementina cDNA clone C32007H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920404 ID=FC920404; Name=FC920404; organism=Citrus clementina; type=EST; length=700bp
GTGACTCTGCTTGGCGCATGCCCAGAAGCCTGGTCCCTTGTATATGAGTA
TTTGCCCAATGGTAGTCTCCAAGACCGTCTTTTCCGTAAAAGCAACGTTT
CTCCCTTGTTATGGAAGGATCGAGCTCGGATTGCAGCTGAAATAGCTAGC
GGCCTTTGCTTTTTGCACTCATCCAAACCTGAAAAGATTGTCCATGGTGA
TTTGAAACCACAAAACATTCTTCTAGACTCTGAACTCAGCAGCAAGATAT
GCGATTTTGGCATCTGCCGGCTGGTAACCGAGGACACCCTTTATTTGCCC
AGTTTTCATCGGAGCACTGCGCCAAAGGGTTCTTTTCCATATGCAGATCC
AGAGTACCACAGGACTGGAGTCCTAACTCCCAAGTCCGACAGTTACTCCT
TTGGGTTGATAATCCTACAGCTACTTACTGGAAGGCTGCCAGTTGGGTTA
GCAGGTGAAGTGCGAAGAGCTGTGTCATGCGGGAAGTTATCATCCATCTT
GGATCCATTAGCTGGAGATTGGCCTACGTTTGTTGCAAGGCGTTTAGTGG
ACCTGGGATTGCAATGCTGTGAATTGTACGGTAGGGAGCGACCCGATATC
ACACCATCTCTGGTAAAGGAATTGGAACAGCTGCATGTTGCAGAGGAACG
ACCAGTTCCATCATTCTTTTTGTGCCCCATTCTTCAGGAAATAATGCATG
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