FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_STRM5 (Chaperone protein dnaJ OS=Stenotrophomonas maltophilia (strain R551-3) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            + + +YY+VLGV+ TA++ E+KKAY   A K HPD+NP D  A  +F+   EAY+VLSD  +R+ YD++G
Sbjct:    1 MSKRDYYEVLGVARTANDEELKKAYRRCAMKFHPDRNPGDAAAEASFKECKEAYEVLSDGNKRRMYDSHG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ROSDO (Chaperone protein dnaJ OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            +YY+VLGVS  AS  +IKK Y  KA+++HPD+N +DP A   F+   EAY+VL D  ++ AYD YG
Sbjct:    5 DYYEVLGVSKGASSDDIKKGYRRKAKELHPDRNKDDPNAEAQFKEANEAYEVLKDADKKAAYDRYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEA6 (Chaperone protein dnaJ OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            + + +YY+VLGV  +ASE +IKKAY   A K HPD+   D    + F+ + EAY++L+D  +R AYD YG +G+
Sbjct:    1 MSKRDYYEVLGVEKSASERDIKKAYKRLAMKYHPDRTQGDKAMEEKFKEVQEAYEILTDSQKRAAYDQYGHAGV 74          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_EDWI9 (Chaperone protein dnaJ OS=Edwardsiella ictaluri (strain 93-146) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI------IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS  A E EIKKAY   A K HPD+N  D  A   F+ + EAY++L+D  +R AYD YG +      +          A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSREADEREIKKAYKRLAMKYHPDRNQGDKEAEDKFKEIKEAYEILTDAQKRAAYDQYGHAAFEQGGMGGGGGGFGGGADFSDIFG-DVFGDIFG 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOTE (Chaperone protein dnaJ OS=Clostridium tetani GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGK-------SGISTEAIIDPAAIFAMLFG 452
            ++Y+VLGV   A++AEIKKA+   A K HPDKN  +  A + F+ + EAYQVLSDP +R  YD +G        +G S     D   IF   FG
Sbjct:    5 DFYEVLGVEKGANDAEIKKAFRKLALKYHPDKNAGNKEAEERFKEINEAYQVLSDPQKRAQYDQFGTADFNGGGAGFSGFEDFDLGDIFESFFG 98          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLPD (Chaperone protein dnaJ OS=Chlorobium phaeobacteroides (strain DSM 266) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 33/74 (44.59%), Postives = 54/74 (72.97%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA 413
            +YY+VLG+S +A++ EIKKAY   A + HPDKNP++  A ++F+ + EAY+ LS+  +R+ YD +G +G+ + A
Sbjct:    4 DYYEVLGLSRSATKDEIKKAYRKLAMQYHPDKNPDNKDAEEHFKEVNEAYEALSNDDKRRRYDQFGHAGVGSSA 77          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIAD (Chaperone protein dnaJ OS=Acinetobacter sp. (strain ADP1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            +YY+VLGVS TAS+ EIKKAY   A K HPD+NP++  A   F+   EAY+VLSD  +R  YD  G
Sbjct:    5 DYYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDNAEAEDKFKEASEAYEVLSDSEKRSMYDRMG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DJC10_HUMAN (DnaJ homolog subfamily C member 10 OS=Homo sapiens GN=DNAJC10 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            + ++Y +LGVS TAS  EI++A+   A K+HPDKNPN+P A  +F  +  AY+VL D   R+ YD YG+ G+
Sbjct:   33 DQDFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 104          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJB6_PONAB (DnaJ homolog subfamily B member 6 OS=Pongo abelii GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP-NDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            +YY+VLGV   AS  +IKKAY   A K HPDKNP N   A + F+ + EAY+VLSD  +R  YD YGK G++
Sbjct:    3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLN 74          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJB6_MACFA (DnaJ homolog subfamily B member 6 OS=Macaca fascicularis GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP-NDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            +YY+VLGV   AS  +IKKAY   A K HPDKNP N   A + F+ + EAY+VLSD  +R  YD YGK G++
Sbjct:    3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLN 74          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_STRM51.262e-1248.57Chaperone protein dnaJ OS=Stenotrophomonas maltoph... [more]
DNAJ_ROSDO1.262e-1251.52Chaperone protein dnaJ OS=Roseobacter denitrifican... [more]
DNAJ_PSEA61.262e-1244.59Chaperone protein dnaJ OS=Pseudoalteromonas atlant... [more]
DNAJ_EDWI91.262e-1240.20Chaperone protein dnaJ OS=Edwardsiella ictaluri (s... [more]
DNAJ_CLOTE1.262e-1243.62Chaperone protein dnaJ OS=Clostridium tetani GN=dn... [more]
DNAJ_CHLPD1.262e-1244.59Chaperone protein dnaJ OS=Chlorobium phaeobacteroi... [more]
DNAJ_ACIAD1.262e-1254.55Chaperone protein dnaJ OS=Acinetobacter sp. (strai... [more]
DJC10_HUMAN1.262e-1247.22DnaJ homolog subfamily C member 10 OS=Homo sapiens... [more]
DNJB6_PONAB1.648e-1252.78DnaJ homolog subfamily B member 6 OS=Pongo abelii ... [more]
DNJB6_MACFA1.648e-1252.78DnaJ homolog subfamily B member 6 OS=Macaca fascic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
back to top